Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00066 ATGATCGGTCGCACCTTCAATGATCACTCACTCCTTGATGACATGAAGCTCTGGCCTTTTAAGGTTGTCCCTCACCCTAACAACAACAACAATCCAGCCATTTTTGTTGACCATAAGGGTCAACATACTACTTACTTTACACCCGTAGAGGTCTCTGCCATGGTGATCAAAGAGCTGAAGGAGGTTGCTGAAGCTTCTTTAGGCCATCCTGTGAAGGATGCAGTCATCACTGTCCCTGCTTACTTCAACAACTCTCAGAGACAAGCCACCATAGACGCCGGAAAGATCGCCGGACTTAACGTCATGACGATCATAAACGAGCCTACTGCTGCTGCCATTTCTTATGGCTTCGACAACAAGACTTGGAGGGAAGGTGAGAGGGATGTGCTTGTGTTTGATCTTGGTGGAGGCACTTTGGATGTTTCATTGGTGACAATTGATGAAGGGATGTTCAAGGTGAAGGCCACTTTGGGAGACACACATTTGGGAGGTTTAGATTTTGATAACAAAATGGTGAACCATTGTGTTGAATTGTTTAAAGGGAAATACAACAAGGACATTAGTGGGGATGTGAAAGCTTTGGGGAGGTTAAGGTCACATTGTGAGAAAGCCAAGAGGACTCTCTCTTCCAATTCAGAAACAAGAATCGAAATTGATGGTTTATATGAAGGTATTGATCTTTACCTCACTGTTACTAGAGCTGAATTTGAGGAACTGAACAAAGACTTGTTCAACAAGTGCATGGAGACAGTGAAGAACTGCCTAATTCAGGCTAAGGTTGATAAAAGCCAAGTCGATGAGATTGTTCTAGTTGGTGGGTCTACTAGAATTCCAAAAGTTCAGCAACTCTTGAAGGAGATGTTCTGTGTCAATGGGAGGGTGAAAGAGCTTTGCAAAAGCATCAATGCTGATGAGGCTGTGGCTTATGGTGCTGCGGTTCAGGCAGCAATATTGAGTGGTGAAAGAGACAAGAAAGTGGAGGAGCTCTTGTTGCTTGATGTGTTGCCTTTAAGCCTTGGAATTGAAGCTTCCGGTGGAGCCATGTCGGTTTTGATTCCGAAGAACACAACGATTCCCACCAAGAAAGAGAGGTTTTTTCTACTTCATATGAGGACCAAAGCAGTGCTATGA 1131 0.4412 MIGRTFNDHSLLDDMKLWPFKVVPHPNNNNNPAIFVDHKGQHTTYFTPVEVSAMVIKELKEVAEASLGHPVKDAVITVPAYFNNSQRQATIDAGKIAGLNVMTIINEPTAAAISYGFDNKTWREGERDVLVFDLGGGTLDVSLVTIDEGMFKVKATLGDTHLGGLDFDNKMVNHCVELFKGKYNKDISGDVKALGRLRSHCEKAKRTLSSNSETRIEIDGLYEGIDLYLTVTRAEFEELNKDLFNKCMETVKNCLIQAKVDKSQVDEIVLVGGSTRIPKVQQLLKEMFCVNGRVKELCKSINADEAVAYGAAVQAAILSGERDKKVEELLLLDVLPLSLGIEASGGAMSVLIPKNTTIPTKKERFFLLHMRTKAVL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00066 376 SUPERFAMILY Actin-like ATPase domain 127 318 IPR043129 -
Stsc120833g00066 376 ProSitePatterns Heat shock hsp70 proteins family signature 3. 268 282 IPR018181 -
Stsc120833g00066 376 Gene3D - 120 301 - -
Stsc120833g00066 376 FunFam Endoplasmic reticulum chaperone BiP 27 130 - -
Stsc120833g00066 376 PRINTS 70kDa heat shock protein signature 74 94 - -
Stsc120833g00066 376 PRINTS 70kDa heat shock protein signature 137 147 - -
Stsc120833g00066 376 PRINTS 70kDa heat shock protein signature 301 321 - -
Stsc120833g00066 376 PRINTS 70kDa heat shock protein signature 328 347 - -
Stsc120833g00066 376 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 325 367 IPR029047 -
Stsc120833g00066 376 Pfam Hsp70 protein 1 368 IPR013126 GO:0005524|GO:0140662
Stsc120833g00066 376 Gene3D Actin; Chain A, domain 4 163 246 - -
Stsc120833g00066 376 Gene3D - 1 315 - -
Stsc120833g00066 376 FunFam heat shock 70 kDa protein-like 1 54 - -
Stsc120833g00066 376 SUPERFAMILY Actin-like ATPase domain 1 118 IPR043129 -
Stsc120833g00066 376 PANTHER HEAT SHOCK PROTEIN 70KDA 1 366 IPR013126 GO:0005524|GO:0140662
Stsc120833g00066 376 ProSitePatterns Heat shock hsp70 proteins family signature 2. 131 144 IPR018181 -
Stsc120833g00066 376 FunFam Heat shock 70 kDa 163 246 - -
Stsc120833g00066 376 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 316 372 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00066 Stsc-Chr120833 283403 289353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00066 1 366 Calmodulin-binding Proteins AT3G12580 66.667 4.80e-170 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00066 K03283 - gmx:100795699 489.189