Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00051 ATGGATGAAGTTCAGGGAAGTTCAAGTTCCTTGCCTCCATTTCTCACAAAGACATATGAGATGGTGGATGATCCTTCCACCAATTCCATTGTATCATGGAGTGACAGCAACAGGAGTTTTGTTGTTTGGAATCCACCAGAGTTTGCAAGGGTCTTGTTACCAAAATTCTTTAAGCACAATAACTTCTCAAGCTTTATCAGACAGCTCAACACTTATGGCTTTAAGAAGATTGAGACTGTACAATGGGAATTTGCCAATGATGATTTTGTAAGAGGTCAACCAAATCTTATGAAGAATATTCATAGGCGCAAACCGGTTCATAGCCATTCTTTACAGAATCAACATGGACAAGTGGCTACTCCATTAACTGAGTCAGAACGGAAAAGTCTAAAAGATGACATTGAAAAGCTTAAGCATGATAAGCAACAACAAATTCTAGAGTTAGAGAGACAAGAACAAGAGTGGCAAAAGTATAAGTTAGGAATAGAAAGCACAAAGAATCGTTTGGAGACCATAGAAAAGAGGCATCAAAATATGATTTCTTCTATTTCTGAAGTGTTGCATAGACCTGAGGCTGCATTTAATCTGTTGACACTGACAGAAAACATGGAAAGAAAACGAAGGTTGCCAAAAGGTGGTGGTCATTTTACTGATGAAGCTAACATCGAAAATGATCCTATGGAAATATCCCATATGTTAGAAGATGCAGAGATTAATGCCTTCATCACATCAAGTATAAAACGAATGAATCAGCTCGAGTCATCTCTGGTATTTTGGGAATATATTGCACAAGATGTGAATGAAAACCTTGTTCAAAGTCATTCAAACTTAGACATTGATGAATCCACAAGTTGTCCAGACAGTCCAGCAGTATCTTACGTGCAACTTGAGGTTGAACTTCAGCCTAATTCATTTAGAATAGATATGAACTCTGAGCCAACTCTACCTGCTGGTTCTGATACTATTGCATCAAAGGAACAACCTGTTGGAACTACCCCTGCAGCCACCTGTGTTAACGACATATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCAACAGAACTACAGGAGACACAATCAGAAAGATTGGACTCCAACAGTAGAAGGAATGAAGGAAAGTCTATTGCACATGGTAAATTTTGGTGGAACATGAGGGATGTAAATAATCTTCCAGAACAGATGGGTCATTGA 1194 0.3861 MDEVQGSSSSLPPFLTKTYEMVDDPSTNSIVSWSDSNRSFVVWNPPEFARVLLPKFFKHNNFSSFIRQLNTYGFKKIETVQWEFANDDFVRGQPNLMKNIHRRKPVHSHSLQNQHGQVATPLTESERKSLKDDIEKLKHDKQQQILELERQEQEWQKYKLGIESTKNRLETIEKRHQNMISSISEVLHRPEAAFNLLTLTENMERKRRLPKGGGHFTDEANIENDPMEISHMLEDAEINAFITSSIKRMNQLESSLVFWEYIAQDVNENLVQSHSNLDIDESTSCPDSPAVSYVQLEVELQPNSFRIDMNSEPTLPAGSDTIASKEQPVGTTPAATCVNDIFWEQFLTENPGSTELQETQSERLDSNSRRNEGKSIAHGKFWWNMRDVNNLPEQMGH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00051 397 Coils Coil 162 182 - -
Stsc120833g00051 397 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 248 IPR027725 -
Stsc120833g00051 397 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120833g00051 397 MobiDBLite consensus disorder prediction 110 124 - -
Stsc120833g00051 397 Coils Coil 127 154 - -
Stsc120833g00051 397 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120833g00051 397 Gene3D - 6 104 IPR036388 -
Stsc120833g00051 397 FunFam Heat shock transcription factor 1 7 104 - -
Stsc120833g00051 397 MobiDBLite consensus disorder prediction 104 126 - -
Stsc120833g00051 397 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120833g00051 397 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120833g00051 397 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120833g00051 397 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120833g00051 397 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Stsc120833g00051 397 MobiDBLite consensus disorder prediction 349 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00051 Stsc-Chr120833 236300 237781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00051 7 397 HSF AT4G18880 49.377 1.26e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc120833g00051 HSF_DNA-bind 5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00051 K09419 - gmx:100820566 520.005