Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00050 ATGAAGTGGGGTGGAAGAAAAGCTTCTTCAGCTTCTTCTTCTTCCACTTCTTCTTCTCCTTCTGTGCCTTCAAATCTCCATGCTTCTCCTTTTTCTTGGTTCTCTAAGTTCAAGCACATGAGAATCAACTCATCATCAACTACTCATGCAAATTCCAAGATAAAGAAGCCACCAAAGCAGACTACTTCTTCTACTGTCTCACCGCCACGGTATTCTTGTGGGAATAATAATAAATATGGTGGTGATGATGCTTCTTCTTCTTCTCTATGTAGATCTTCATTTGGTGAACACGATGAAGATAATGTTATTGAATCTTCAGGTAAGAAGAATGCATCAAGAGAAGCCACTCTCATCAACAACAACATCATCAAGTTGAAGGAGAAAAAGGAAGAAAGAAAATTTGTGGATGATAGGAAGGTTAAAATGGAGATGAAAGACAAGGAATATGAAAACCTAAGGATGAGATTTGAGAAGAAAGCTCAAAAGGTTTTGCAACAACAGCTCTTCAAGTTAGAAACAGAAAGAGAAGAATCAAGAAAATTAATACAAGAGAAACATGTGCATTATTCATTCCCATCTTCATCTGAATCCAAGAAGAGTTCCAATTCTCTTAGAACTAGTAACAATAAGAATAACATTGTGGAGAAGAAACTGATGATGAATCCTACTGAGGAGTTGAACATGAACTTGAAGGTGAAGACCAGGAAAAAGAAGCAACAATCATCAGTAGTTGATGTTAGCAGCAGGGAAATTATTCATCAGAGGAGGAAATCAAGGAATAGCCCCAGAGTCAGAATACATTCTCCAAGGATGTCTTCTCCGAAGGTTGATCAAGTTTGCAGAATAAAGGCTATAGAAGACATGAAGAAAGCAAGACTGAAGATGAAGAAAGAAAGAGAGGAGATTGTTTTGCAGGAAACACTACTACCACTCACAAAAGGGTCATCATCATCAGAAGATAGATTTGCTGTTATAAAATGTTCATTGGATCCAAGACAAGATTTTAGAGACTCTATGATGGAGATGATCATTGAGAAGCGGATTAGAAACCCAGAAGAAATGGAAGAGCTTCTGGCATGCTATCTAACATTGAATGCTGATGAATATCATGATCTCATCATTCAAGTCTTCAGGCAAGTTTGGTTTCAAATGAGCCATGGTGGTTAA 1167 0.3753 MKWGGRKASSASSSSTSSSPSVPSNLHASPFSWFSKFKHMRINSSSTTHANSKIKKPPKQTTSSTVSPPRYSCGNNNKYGGDDASSSSLCRSSFGEHDEDNVIESSGKKNASREATLINNNIIKLKEKKEERKFVDDRKVKMEMKDKEYENLRMRFEKKAQKVLQQQLFKLETEREESRKLIQEKHVHYSFPSSSESKKSSNSLRTSNNKNNIVEKKLMMNPTEELNMNLKVKTRKKKQQSSVVDVSSREIIHQRRKSRNSPRVRIHSPRMSSPKVDQVCRIKAIEDMKKARLKMKKEREEIVLQETLLPLTKGSSSSEDRFAVIKCSLDPRQDFRDSMMEMIIEKRIRNPEEMEELLACYLTLNADEYHDLIIQVFRQVWFQMSHGG 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00050 388 MobiDBLite consensus disorder prediction 188 213 - -
Stsc120833g00050 388 MobiDBLite consensus disorder prediction 233 273 - -
Stsc120833g00050 388 MobiDBLite consensus disorder prediction 238 257 - -
Stsc120833g00050 388 MobiDBLite consensus disorder prediction 93 107 - -
Stsc120833g00050 388 MobiDBLite consensus disorder prediction 1 29 - -
Stsc120833g00050 388 Coils Coil 108 128 - -
Stsc120833g00050 388 MobiDBLite consensus disorder prediction 7 29 - -
Stsc120833g00050 388 MobiDBLite consensus disorder prediction 44 110 - -
Stsc120833g00050 388 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 165 384 IPR038933 GO:0045892
Stsc120833g00050 388 ProSiteProfiles OVATE domain profile. 324 383 IPR006458 -
Stsc120833g00050 388 Coils Coil 281 301 - -
Stsc120833g00050 388 MobiDBLite consensus disorder prediction 44 92 - -
Stsc120833g00050 388 NCBIfam uncharacterized plant-specific domain TIGR01568 323 384 IPR006458 -
Stsc120833g00050 388 Pfam Transcriptional repressor, ovate 328 384 IPR006458 -
Stsc120833g00050 388 MobiDBLite consensus disorder prediction 187 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00050 Stsc-Chr120833 232496 233662 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Stsc120833g00050 Ovate 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00050 - - ahf:112783885 433.721