Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00049 ATGACTGTTCCAAAGGACTTTTGCTGTCCGATATCGTTGGATTTGATGCGAGATCCTGTGATAATTTCCACAGGGCAAACATATGATAGGAGTTCCATTTCCAGGTGGATGGATGAAGGCCACACGACTTGTCCGAAAACAGGGCAAATGCTTGCCCACAATCGCCTTGTTCCGAACCGTGCGCTAAGGAATTTGATAGTGCAGTGGTGCTCTGCACATGGAATTCCCCTCGAACCGCCAGAGGTTATGGATCCAATGGCTGAAACCTTTGCATCAGCTTGTCCATCCAGAACTTCCCATGAAGCCAACAGAGCCACGGCGACACTTCTCATTCAGCAGCTTGCTAATGGGTCGCAAGCCGGGAAGACTGTAGCTGCTAGGGAAATAAGAATGCTAGCCAAAACTGGTAAAGACAACCGTTCTTTCATTGCAGAAGCCGGAGCAATTCCTTATCTTAGAAATTTACTATCATCTCCTAGTGCTGTTGCTCAGGAGAATTCTGTAACTGCATTGCTCAACCTATCCATTTTTGACAAGAACAAAAGCCGGATCATGGATGCGGAAGGGTGTCTTGGATCGATTGTTGATGTCTTGAGATTCGGCCACACAACAGAAGCAAGGGAAAATGCAGCCGCGACATTGTTCAGCTTATCTGCAGTTCATGACTATAAGAAGAGGATTGCAGATAAGACGGGTGCTGTTGAAGCTTTGGCAGGATTGTTGCAAGAGGGGACTTCAAGAGGAAAGAAGGATGCTGTAACGGCTTTGTTCAATCTTTCCACTCATACCGAGAATTGTGTTAGAATGATAGAGGCAGGTGCAGTAACGGCTCTAGTTGGAGCTTTGGGGAATGAAGGAGTCTCGGAGGAAGCAGCAGGTGCCTTGGCCTTGATTGTTAGGCAGCCAATCGGAGCGAAAGCAGTGGTGAAGGAAGAAACAGCAGTAGCCGGATTGATAGGCATGATGCGTTGTGGAACACCAAGAGGCAAAGAGAATGCAGTTGCAGCATTACTGGAGTTGTGCCGTAGTGGCGGTGCAGCTGCAACTGAAAGGGTGGTTAAGGCACCGGCTTTGGCCGGATTACTTCAGACCTTGCTTTTTACCGGAACAAAGCGGGCAAGACGAAAGGCGGCTTCACTTGCAAGAGTGTTTCAGAGATGTGAAGCTTTACATTATGGTGGATTAGGTGTAGGGTATGCATTTGCCAGCAATTCAGCTGCAACTAGGGATACAAGCTTTGGTGGTGATGTTTCAGTGCCAATGTCCATTTCTGTGCCAGTTTTATAG 1287 0.4771 MTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQMLAHNRLVPNRALRNLIVQWCSAHGIPLEPPEVMDPMAETFASACPSRTSHEANRATATLLIQQLANGSQAGKTVAAREIRMLAKTGKDNRSFIAEAGAIPYLRNLLSSPSAVAQENSVTALLNLSIFDKNKSRIMDAEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKRIADKTGAVEALAGLLQEGTSRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVGALGNEGVSEEAAGALALIVRQPIGAKAVVKEETAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEALHYGGLGVGYAFASNSAATRDTSFGGDVSVPMSISVPVL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00049 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 76 IPR013083 -
Stsc120833g00049 428 ProSiteProfiles U-box domain profile. 2 76 IPR003613 GO:0004842|GO:0016567
Stsc120833g00049 428 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 232 274 IPR000225 GO:0005515
Stsc120833g00049 428 SMART Ubox_2 6 69 IPR003613 GO:0004842|GO:0016567
Stsc120833g00049 428 Pfam U-box domain 3 73 IPR003613 GO:0004842|GO:0016567
Stsc120833g00049 428 Pfam Armadillo/beta-catenin-like repeat 137 175 IPR000225 GO:0005515
Stsc120833g00049 428 PANTHER U BOX DOMAIN-CONTAINING 3 386 - -
Stsc120833g00049 428 SMART arm_5 221 261 IPR000225 GO:0005515
Stsc120833g00049 428 SMART arm_5 262 300 IPR000225 GO:0005515
Stsc120833g00049 428 SMART arm_5 301 342 IPR000225 GO:0005515
Stsc120833g00049 428 SMART arm_5 136 176 IPR000225 GO:0005515
Stsc120833g00049 428 SUPERFAMILY ARM repeat 108 384 IPR016024 -
Stsc120833g00049 428 SUPERFAMILY RING/U-box 2 76 - -
Stsc120833g00049 428 CDD RING-Ubox_PUB 4 56 IPR045210 -
Stsc120833g00049 428 FunFam RING-type E3 ubiquitin transferase 2 77 - -
Stsc120833g00049 428 Gene3D - 106 382 IPR011989 -
Stsc120833g00049 428 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 189 IPR000225 GO:0005515
Stsc120833g00049 428 FunFam RING-type E3 ubiquitin transferase 79 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00049 Stsc-Chr120833 227101 229712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00049 1 428 U-box Gene Family AT1G29340 71.296 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00049 - - gmx:100811153 736.873