Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00043 ATGGCTTGTTCAGGTTTCACAAAAGGCAAGCATGATTGGTTGGTAGTGTTCCCTTTCGTGATGCTTATTTTGATACCCCAGAAAAGCTTCTCCGAGAAAACAGCTTGCAATGTTACTTCATCATGCGGGAAAATCAGCAACATAAGGTATCCATTCAGACTGAAAAGCGACCCACCGAACTGCGGGGACAGCAGGTACGAGCTGGAATGCGTGAACGATGTTGCGTTGTTGCGGTTAACAGAGGAAGCAGAGTACAAAGTGGAATCCATAAATTACAACAACTACACTATCAGGCTGGTGGATCCAAACATTGAGCAGGACAATTGCTCCTCCCTCCCTCGCCACTTCCTTTACAAATTCAATTTCTCCGATGCCTCCTCAGGTTCTAATCAGCACTGGGATGTTGATAAATACCATGCCACTCAATTGCAAAAACCAGACATGGAAATCTTCTCTGCTCCCCTATTTGAGCACATAATATACATGAGCTGCAACATTAGAGTGACGGAATATGAAGGCGAATATGAATACTTTTCATCTCGCCATCGCGTGAGCAACAAGAATAATAATAATTCATGCTTGGATTTGCATACCTATGCTGTTGTTGGGGACTTGAATGCCACGGGACCGCGATGGTGGAAGCCTGGTTGCCACGTCAAGATGATTGCTGCCACATCTGCAGGCTTCTTGTTAAGACACCCAGAGAATCAACCTATTTGGCAAGCACCCAATTTTTCGTATGCTGATATTCACATATCCTTAGCTTACGGGTTTGAGTTGTCGTGGTTGCACCTCCACTGCCACCATAGCTGCACAACCAGAACTTGCTATTTCAACCGCACCACTCAAAACGCCTCCTGCTTTTCTCCTTGTACCTATCTCCGCTACACCGATTCCCTCGCTCGAATTCATTGCGGAAAGCACAGTTTAACAATTCTAAAAAAAGTATGGAGCTCCAATGATGCTTACCTGATATTAAGGGTGGTGGCTGGACAGATCACTGTAGATATGATCGGAATTAGGGTTTTGATGGGGACAACACTCTTGGTTGTTCTTATTATTCGTAAATGGCGAAGAAGACATATGTCATCATATGCAAATATTGAAATATTTTTGCAAGATAATAAACTTGCGCCAATAAGATACTCATATAGAGAAATTAAGATGATGACAAAAAACTTCAAGGAAAAGTTGGGTAAAGGTGGCTTCGGCTCTGTATACAAAGGGAAGCTGCGCAGTGGGCCTCTTGTAGCAATAAAGATGCTAGACACATCCAAATCTAAAGGACAAGATTTCATCAGTGAGGTAGCAACCATCGGAAGAATACACCATATGAATGTGGTCAGGCTTATTGGATTTTGTATTGAGGGATCGAAGCGTGCCCTTGTCTATGATTTTATGCCTAATGGTTCTCTTGATACATATATTCTCTCTAAAGAAGAAAACATTTCTTTAAGTTATGAGAAAATATATCAGATATCATTGGGAGTAGCCAGAGGTATTTCTTACCTTCATGAAGGTTGTGACATGCAAATTCTACATTTCGACATCAAACCGCATAATATTCTTCTCGATGAAAACTTCATTCCCAAAGTTTCTGATTTTGGATTGGCAAAATTATATCCCATAGATGATAGCATTGTCACTTTGACTGATCAAAGAGGAACAGTTGGATACATTGCACCTGAATTGTTTTACCGCAACATTGGGGGAGTCTCCTACAAGGCTGATGTTTATAGCTTTGGAAAGTTGTTGATGGAAATGGCAAACAGAAGGAAGAATTTGAACCCACATGCAGAGAATTCAAGCAGAGTATTCTTTCCGACCTGGATCTATCATCAATTCAGCAATGGCAGAGACATTGAATTGGATAATTGCACAGAGGAGGAGAAGAACAAAGTCAAGAAGATGATAATTGTTGCACTGTGGTGTATCCAGCTAAAACCCCGTGATCGTCCTTCAATGAAACAAGTTGTGGAGATGCTTGAAGGAGAAGCTGAAGACCTGACAATGCCTCCAGAGCCTTCCTTGTTTCCAGATGAAGAAGAACTTGATTCAAAGCTGCACCAAACATCAAGATCAGATTATGACTCAGAAAGTGCCAGTAGTAGTTATTTAGGCGACACTACCAACAGTAATATATCAGAGAATTGCTTATCCACTGACTAA 2169 0.4154 MACSGFTKGKHDWLVVFPFVMLILIPQKSFSEKTACNVTSSCGKISNIRYPFRLKSDPPNCGDSRYELECVNDVALLRLTEEAEYKVESINYNNYTIRLVDPNIEQDNCSSLPRHFLYKFNFSDASSGSNQHWDVDKYHATQLQKPDMEIFSAPLFEHIIYMSCNIRVTEYEGEYEYFSSRHRVSNKNNNNSCLDLHTYAVVGDLNATGPRWWKPGCHVKMIAATSAGFLLRHPENQPIWQAPNFSYADIHISLAYGFELSWLHLHCHHSCTTRTCYFNRTTQNASCFSPCTYLRYTDSLARIHCGKHSLTILKKVWSSNDAYLILRVVAGQITVDMIGIRVLMGTTLLVVLIIRKWRRRHMSSYANIEIFLQDNKLAPIRYSYREIKMMTKNFKEKLGKGGFGSVYKGKLRSGPLVAIKMLDTSKSKGQDFISEVATIGRIHHMNVVRLIGFCIEGSKRALVYDFMPNGSLDTYILSKEENISLSYEKIYQISLGVARGISYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDDSIVTLTDQRGTVGYIAPELFYRNIGGVSYKADVYSFGKLLMEMANRRKNLNPHAENSSRVFFPTWIYHQFSNGRDIELDNCTEEEKNKVKKMIIVALWCIQLKPRDRPSMKQVVEMLEGEAEDLTMPPEPSLFPDEEELDSKLHQTSRSDYDSESASSSYLGDTTNSNISENCLSTD 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00043 722 PANTHER RUST RESISTANCE KINASE LR10-RELATED 364 685 IPR045874 GO:0004672
Stsc120833g00043 722 CDD STKc_IRAK 398 664 - -
Stsc120833g00043 722 Pfam Wall-associated receptor kinase galacturonan-binding 36 101 IPR025287 GO:0030247
Stsc120833g00043 722 MobiDBLite consensus disorder prediction 695 722 - -
Stsc120833g00043 722 MobiDBLite consensus disorder prediction 680 694 - -
Stsc120833g00043 722 Gene3D Transferase(Phosphotransferase) domain 1 467 671 - -
Stsc120833g00043 722 Gene3D Phosphorylase Kinase; domain 1 371 466 - -
Stsc120833g00043 722 SUPERFAMILY Protein kinase-like (PK-like) 378 663 IPR011009 -
Stsc120833g00043 722 ProSiteProfiles Protein kinase domain profile. 392 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00043 722 FunFam serine/threonine-protein kinase PBS1-like 362 466 - -
Stsc120833g00043 722 ProSitePatterns Protein kinases ATP-binding region signature. 398 420 IPR017441 GO:0005524
Stsc120833g00043 722 FunFam PR5-like receptor kinase 467 673 - -
Stsc120833g00043 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672|GO:0006468
Stsc120833g00043 722 MobiDBLite consensus disorder prediction 665 722 - -
Stsc120833g00043 722 Pfam Protein kinase domain 394 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00043 722 SMART serkin_6 392 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00043 Stsc-Chr120833 186283 189977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00043 21 684 Receptor kinase-like Gene Family AT5G38260 34.453 7.11e-108 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc120833g00043 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00043 - - aip:107619931 832.787