Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00042 ATGTGGTATAATAGCGTGGCAGTGGTGGCGGTGGTGGCCGTGGCGGGGGTTCTTTGCATGTGCGAGGGTAAAAAGGAGTTATGCGGTGGCCACAGGTGCGGAAATGGTCCCCCAATCCGGTTTCCATTCCGTCTAAAAGACAAGGAGCCCACGGAATGTGGTTATCCTTATCCCGGCTTTGATCTCACTTGTGATCATCATGACACCATCTTTGAGATGTCATTCTCTGAAACAGCTTCAATTAAATTTGTTGTTGACAGCATAGATTATGAGATGGAAATTTTACGGGTCTCCTACCCAGAAAGTTGCCTTCGCGGACGCCTTCTCGAACTATTCAAAACTAATGCTTCATTTTCTCCTTTTCCACTACCTGACAATGACCAAGATCCTCGCCCTGTATCTGTATCTTTCTTCAGTTGTTCACCTGACCCGCAATATCCATTCTCTTGCCCCATTTTTGTTGCTGGCGAATCTAGCACACTCATCGATGACAACCTCGTATCCTGCACCAAAGTGTTAGATGCTTCCTCCTCCTTTGATTTTGACACGGGATCCGAAACCATTAATATTAACCAGTTGCATTTATCGTGGTCAAAACCAAGTTGCTCTTCCTGTGAATTAAGTGGCAAGCTATGTAGACTAGCGAACAACAATAATGGTCCCATAAAGGTTGAGTGCTATGAGAAAACAACCCATCTCAACCCAATCATCAAGATACTTATGTACATTACAGGTGGCGCGTTTGAATCATTGCTGCTGCTGCTGGCTGTTGTTTTCTTCTTTAAGACCTATCGATACTTTAGAACGAAAGGAGAAGATCAAGCAAGGATTCGCAAGTTCCTGGAGGATTACAGAGCGCTCAAACCTACTAGATTCTCTTACAATGATATAAAGAGAATCACAAATGGTTTCAAAGACAAGTTAGGTGAAGGAGCTCACGGTGCTGTCTTCAAAGGCAAGCTCTCCTCAAACATTATTGTCGCAGTGAAAGTACTAAACAATGCCATAGAGGGTGAAGGGAAAGATTTCATCAATGAGGTTGGAACCATGGGCAAAATTCACCATGTTAATGTGGTTCGCTTGCTTGGCTTTTGCGCTCAAGGATTCCATCGCGCTTTAGTCTATGATTTCTTCCCAAGAGGATCACTACACAACTTTTTATCTACGCCAGACAATGATGACATATTCCTTGGATGGGAAAAGTTGCACCAAATTGCTCTTTCTATAGCAAGAGGCATTGAGTATCTTCACCATGGTTGTGAGCACCAAATCCTTCATTTTGACATCAATCCACATAACATCTTGCTTGATGACAGATTCACTCCCAAGATTACTGATTTTGGGTTAGCCAAGTTATGTTCCAAGGACAAAAGTGCAGTGTCAATGACTGCAGCTAGGGGAACCTTAGGCTACATTGCTCCTGAAGTTGTATCAAGAAACTTTGGCACTGTGACTTACAAAGCAGACATTTACAGCTATGGAATGTTGCTGCTTGAAATGGTGGGAGGAAGAAAGAACATGGAGGCAACAGGAGAGGGAGCTTCTCATCACATCTTGTATCCTGAATGGGTGCATAATTTGGTTGATGGGGGAGATGTACATGTTCCTGTTGAAGATGAGAATGATATTAAAATTGCAAAGAAGATTGCAATTGTGGGACTTTGGTGCATTCAGTGGCATCCATCGAACCGTCCATCCATCAAAACTGTTGTGAAAATGCTTGAAGGAGATGCAGATAAATTAACAGTTCCTTCTAATCCTTTTAACTCTACCAATTCTGTTAGTGGAGGAAAAGGATTAGTAACCTCATCAAGGTGTCTAAATTTAGAGTTGGAGGTGATTCGTGAATGA 1851 0.4273 MWYNSVAVVAVVAVAGVLCMCEGKKELCGGHRCGNGPPIRFPFRLKDKEPTECGYPYPGFDLTCDHHDTIFEMSFSETASIKFVVDSIDYEMEILRVSYPESCLRGRLLELFKTNASFSPFPLPDNDQDPRPVSVSFFSCSPDPQYPFSCPIFVAGESSTLIDDNLVSCTKVLDASSSFDFDTGSETININQLHLSWSKPSCSSCELSGKLCRLANNNNGPIKVECYEKTTHLNPIIKILMYITGGAFESLLLLLAVVFFFKTYRYFRTKGEDQARIRKFLEDYRALKPTRFSYNDIKRITNGFKDKLGEGAHGAVFKGKLSSNIIVAVKVLNNAIEGEGKDFINEVGTMGKIHHVNVVRLLGFCAQGFHRALVYDFFPRGSLHNFLSTPDNDDIFLGWEKLHQIALSIARGIEYLHHGCEHQILHFDINPHNILLDDRFTPKITDFGLAKLCSKDKSAVSMTAARGTLGYIAPEVVSRNFGTVTYKADIYSYGMLLLEMVGGRKNMEATGEGASHHILYPEWVHNLVDGGDVHVPVEDENDIKIAKKIAIVGLWCIQWHPSNRPSIKTVVKMLEGDADKLTVPSNPFNSTNSVSGGKGLVTSSRCLNLELEVIRE 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00042 616 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Stsc120833g00042 616 FunFam PR5-like receptor kinase 378 586 - -
Stsc120833g00042 616 Pfam Protein kinase domain 305 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00042 616 SUPERFAMILY Protein kinase-like (PK-like) 285 575 IPR011009 -
Stsc120833g00042 616 FunFam serine/threonine-protein kinase PBS1-like 271 377 - -
Stsc120833g00042 616 Gene3D Transferase(Phosphotransferase) domain 1 378 587 - -
Stsc120833g00042 616 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Stsc120833g00042 616 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00042 616 Gene3D Phosphorylase Kinase; domain 1 278 377 - -
Stsc120833g00042 616 PANTHER RUST RESISTANCE KINASE LR10-RELATED 275 592 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00042 Stsc-Chr120833 183670 185622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00042 1 587 Receptor kinase-like Gene Family AT1G66910 32.917 2.19e-99 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc120833g00042 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00042 - - ahf:112783872 766.148