Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00041 ATGTTGATGATGGTATTAATATTGGTTGGCACGGGGCCGGGGATATGCAACGACGAAGATGGGTGTGGAAGACACAGGTGCGGACGGCATGGCCCTTCGATCCGATTTCCATTCCGTCTTAAAGAGAAGGAGCCTGCTCACTGTGGTTACCCTGGCTTTGATCTCACTTGTTCTGATACTCATGAAACCTTCATTGAGTTCTCTGCAGTTAAACTCCTTGTCACTGATATCCTATATGAATATAACTATTTCCGAGTCTCTGACACACAAAATTGTCTACCCAGCCAGCTCCTCAAACTAATCAACACTTCTTCTTCTTCCTCAATTTCTCCTTTCCAATTCTATAGAGATCCGAGTCTTCAAGATATATCTTTTTTCAATTGTTCACCCGATGCGCAATATCAACTCTCCTGTCCCATTTACGTTGCTACCAGCTACGAGACACTCCTCACTTCCAATCTCGTGTCTTGCACCAAGATGTTTGACATTTCTTCAACCTTCTATGACTCACAAATGGTAGAATGGGACAATACTTTGGATTTGTGGTGGTCCAAACCTAATTGTACAATATGTGAAACACAAGGCAAGAGATGTAAACTGAAGAACAATGGCACTCAAGATGAAGTTGAGTGCTTCGGCCACCATCATTATAAGTTGCTCTTTGGCTCTACAGGTGTTGTTGCAGGTTTAATTCTGGTGGCAGTAGTGGCTATTGCAGTGTTTAAGATCTATCAACATTTTAGAATGAAAGGAGAAGATCGAGCGAGAATTGACAAGTTCTTGCAAGATTACAGGGCACTAAAGCCTACAAGATTCTCTTATGCTGATATTAAGAGGATCACAAATGGTTTCAAGGAAAAGTTAGGCGAAGGAGCTCACGGTGCGGTCTTCAAAGGCATGCTCTCCTCAGAAATTGCCGTAGCTGTGAAGATACTCAACAGCAACACTGAGGCTGAAGGCAAGGATTTCACCAACGAGGTGGGAACCATGGGCAAAATTCACCATGTCAATGTGGTTCGCTTACTCGGCTTCTGTGCACAAGGATTTCACTGTGCTCTAGTTTATGATTTCTTTCCTAAAGGTTCATTGGAAAGCTTCATATCCACACCAGACAAGAAGGACATCTTCCTTGGATGGGGGAAGCTTCACCAAATAGCCCTTGGTGTTGCTAGAGGCATTGAGTATCTTCACCATGGTTGTGAGCAACAGATCCTTCATTTTGACATCAATCCTCACAATATCTTACTAGATGACAACTTCACACCCAAAATCACTGATTTTGGCCTTGCTAAGTTGTGTTCTAAAGATCAGAGCAAAGTTTCAATGACAGCAGCCAAGGGAACCATGGGCTACATTGCACCTGAAATCGTCTCAAGAAACTTCGGAAATGTGTCTCACAAAGCAGACATTTATAGCTATGGAATGTTGTTGCTTGAAATGGTAGGAGGAAGGAAAAACATAGACATGGAAGTTGAGGGGTCTTTGCGGATTTTGTACCCCGAATGGGTGCACAATTTGCTTGATGGGGGTGATTTTCATGTTCACATTGAGGATGAGGAGGATTATAAACTTGGAAAGAAAATTGCAATTGTTGGACTACAATGCATTCAGTGGCAACCATCAGATCGTCCTTCCATCAAGACTGTCATAGGTATGTTAGAAGGAGATGCAGACAAATTATATGTACCTCGTAATGTTTTTGACTTAACAAATTCTATTAGCAGAGGAAGACAAATAACCCACCAGACAAGGCCTCTAAGTTTAGAGTTGGAGAGGATTGAAGAATGA 1788 0.4234 MLMMVLILVGTGPGICNDEDGCGRHRCGRHGPSIRFPFRLKEKEPAHCGYPGFDLTCSDTHETFIEFSAVKLLVTDILYEYNYFRVSDTQNCLPSQLLKLINTSSSSSISPFQFYRDPSLQDISFFNCSPDAQYQLSCPIYVATSYETLLTSNLVSCTKMFDISSTFYDSQMVEWDNTLDLWWSKPNCTICETQGKRCKLKNNGTQDEVECFGHHHYKLLFGSTGVVAGLILVAVVAIAVFKIYQHFRMKGEDRARIDKFLQDYRALKPTRFSYADIKRITNGFKEKLGEGAHGAVFKGMLSSEIAVAVKILNSNTEAEGKDFTNEVGTMGKIHHVNVVRLLGFCAQGFHCALVYDFFPKGSLESFISTPDKKDIFLGWGKLHQIALGVARGIEYLHHGCEQQILHFDINPHNILLDDNFTPKITDFGLAKLCSKDQSKVSMTAAKGTMGYIAPEIVSRNFGNVSHKADIYSYGMLLLEMVGGRKNIDMEVEGSLRILYPEWVHNLLDGGDFHVHIEDEEDYKLGKKIAIVGLQCIQWQPSDRPSIKTVIGMLEGDADKLYVPRNVFDLTNSISRGRQITHQTRPLSLELERIEE 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00041 595 Pfam Protein kinase domain 285 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00041 595 PANTHER RUST RESISTANCE KINASE LR10-RELATED 254 565 IPR045874 GO:0004672
Stsc120833g00041 595 FunFam PR5-like receptor kinase 358 564 - -
Stsc120833g00041 595 SUPERFAMILY Protein kinase-like (PK-like) 264 553 IPR011009 -
Stsc120833g00041 595 Gene3D Transferase(Phosphotransferase) domain 1 358 565 - -
Stsc120833g00041 595 Pfam Wall-associated receptor kinase galacturonan-binding 22 88 IPR025287 GO:0030247
Stsc120833g00041 595 Gene3D Phosphorylase Kinase; domain 1 258 357 - -
Stsc120833g00041 595 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Stsc120833g00041 595 FunFam S-receptor-like serine/threonine-protein kinase 251 357 - -
Stsc120833g00041 595 ProSiteProfiles Protein kinase domain profile. 282 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00041 Stsc-Chr120833 180726 182660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00041 26 563 Receptor kinase-like Gene Family AT5G38260 36.286 9.69e-96 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc120833g00041 Pkinase 8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00041 - - ahf:112783872 1046.57