Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00040 ATGTCCATGTGGTGCATAGTTTTGGTGTTACACCAAAACTTGGCTGCCGGAAAGAGGCAGATGTGTGTTTCATCATCATGCGGCAAAATTGCAAACATAAGTCATCCATTCCGATTGAAAGAAGACCCAAGCAACTGCGGTGACATCAAGTACGAGCTAGAATGCGTGAATGACGTGGCCCTGATACGGTTAACAGAGGAAGCAGTGTACAAAGTAGAAGCCATAAATTACAACAACTTCACAATCAGGCTGGTGGATCCAAACATTGAAGAGGACAATTGCTCCTCCCTCCCCCGCTACTTCTTGTACAGATTCAATTTCACCGATGCACCTAACTCCCAATACGTTTCTTCCCAGCATTGGTATGGTGTGGATGACGCATACCATGCCACTCAATTGCAACACCCAACTTCGGAACAAGCTATGCCTCTATTTCAGCATATAATATACGTGAACTGTATCACCAATGCTTCTTCCTCTTCCACCTGCTTGGATCCTAATACATACGTAGTTGCTGGGGACCTGGAACTCACAGGACGGAGATGGAAGCCTGGATGCCGCATCAACAAAATTGCTGCCACCTCTGGCTTGTTTCAGTTCCAAAAAAAGCATCCCTACTATGGTTGGAGATTTCGGTATGACATTGAAAACGATGATTATGATCCAACAATAACGTACAGTGATGTTCATAGGGCGCTGGCTTATGGATTTGAGCTCTCATGGTTGCATGCTATTTGCCATGAGCATCAATGTGGACCGGGAGCTTGCTACTTCAACCACTCCACTCAAAACGTCAACTGTTATTCTCTTTGTTCCTATCCATATGGAGGAGCCCGCCACTGCGGAATGTACAGTCTAATAAGGTTTCGAAGTCCGAAAGATATAGACGAAACAAATGTGATGCATATAAAGACAGCTATCACTGGGTGGTACGTTTTGTTATCATATATGTCAACAAGGGTTCTGTTTGGGTTTGCACTGTTAGTTGTATTATTGATCTACAAATGGCGAAGAAGAAATCTATCAACTTATGTGAATATTGAGAATTTTCTACAAGATAATCACTTGGCTCCCATAAGGTACTCGTATAAAGAAATCAAGAGTATGACAAAAAATTTCAAGGTCAAATTGGGGCAAGGTGGCTTTGGCTCTGTATACAAGGGCAAATTATGCAGTGGTCCTCATGTAGCAATAAAGATGCTGAAACAGTCCAAGGCTAATGGTCAGGATTTCATTAATGAGGTTGCAACCATTGGGAGAATACACCATGTGAATGTGGTTCGACTTGTTGGATTTTGTGTCGAAGGTTCAAAGCGCGCCCTTGTTTATGATTTCATGTCTAATGGTTCACTTGATAAATATATTTTCTCTAACCAAGAAAGCTTTCTACTAAGTTATGAGAAGATATATGAGATATCTATGGGAGTAGCTCGCGGGATCTCGTATCTTCATCGGGGTTGTGCTATGCAGATTCTGCACTTTGATATCAAGCCTCATAATATCCTTCTTGATGAAAACTTCGTTCCCAAGATTTCGGATTTTGGATTAGCTAAATTGTATCCTATAGACCGCAGCATTGTCACTTTAACTGACAAGAGAGGAACAATTGGCTACATTGCTCCTGAATTGTTTTATAATAACCTTGGTGGAGTCTCATATAAAGCTGATGTTTATAGCTTTGGAATGTTGTTGATGGAAGTGGCAGGTAGAAGGAAGAATTTGAATCCACATGCTGAAAATACAAGCCAAGTATTCTTTCCAACTTGGGTGTATGAACAAGTTATTAGCAGAGGAAAAGAAGTTGAATTGGACAATGGAACAGAAGCTGAAAAGAGTATTGCAAAGAAGCTGATCATAACTGCACTGTGGTGTATACAACTCAGACCTTCCGATCGACCTTCAATGAACGATGTAGTAGCGATGCTTGAAGGAGAACTTTGTAATCTAACAATGCCTCCGAAGCCTTTGTTATATCCAACTGAAGAAACACCTGGTGTGGATGAAAACTTCAATTCTGAACAAATCAGAACAGGTCACTCAGCAAATGCTACAGGTGATTTTGGTGAAACTGTCCCAAGCAATGCTACACTAGAGAATAGCTTATCTGGTAGAAATTGA 2118 0.4127 MSMWCIVLVLHQNLAAGKRQMCVSSSCGKIANISHPFRLKEDPSNCGDIKYELECVNDVALIRLTEEAVYKVEAINYNNFTIRLVDPNIEEDNCSSLPRYFLYRFNFTDAPNSQYVSSQHWYGVDDAYHATQLQHPTSEQAMPLFQHIIYVNCITNASSSSTCLDPNTYVVAGDLELTGRRWKPGCRINKIAATSGLFQFQKKHPYYGWRFRYDIENDDYDPTITYSDVHRALAYGFELSWLHAICHEHQCGPGACYFNHSTQNVNCYSLCSYPYGGARHCGMYSLIRFRSPKDIDETNVMHIKTAITGWYVLLSYMSTRVLFGFALLVVLLIYKWRRRNLSTYVNIENFLQDNHLAPIRYSYKEIKSMTKNFKVKLGQGGFGSVYKGKLCSGPHVAIKMLKQSKANGQDFINEVATIGRIHHVNVVRLVGFCVEGSKRALVYDFMSNGSLDKYIFSNQESFLLSYEKIYEISMGVARGISYLHRGCAMQILHFDIKPHNILLDENFVPKISDFGLAKLYPIDRSIVTLTDKRGTIGYIAPELFYNNLGGVSYKADVYSFGMLLMEVAGRRKNLNPHAENTSQVFFPTWVYEQVISRGKEVELDNGTEAEKSIAKKLIITALWCIQLRPSDRPSMNDVVAMLEGELCNLTMPPKPLLYPTEETPGVDENFNSEQIRTGHSANATGDFGETVPSNATLENSLSGRN 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00040 705 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Stsc120833g00040 705 Pfam Protein kinase domain 374 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00040 705 ProSiteProfiles Protein kinase domain profile. 371 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00040 705 Gene3D Phosphorylase Kinase; domain 1 346 445 - -
Stsc120833g00040 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672|GO:0006468
Stsc120833g00040 705 Gene3D Transferase(Phosphotransferase) domain 1 446 649 - -
Stsc120833g00040 705 MobiDBLite consensus disorder prediction 678 705 - -
Stsc120833g00040 705 PANTHER RUST RESISTANCE KINASE LR10-RELATED 342 663 IPR045874 GO:0004672
Stsc120833g00040 705 SMART serkin_6 371 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00040 705 Pfam Wall-associated receptor kinase galacturonan-binding 22 86 IPR025287 GO:0030247
Stsc120833g00040 705 SUPERFAMILY Protein kinase-like (PK-like) 357 643 IPR011009 -
Stsc120833g00040 705 FunFam serine/threonine-protein kinase PBS1-like 342 445 - -
Stsc120833g00040 705 FunFam PR5-like receptor kinase 446 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00040 Stsc-Chr120833 177161 179739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00040 360 663 Receptor kinase-like Gene Family AT5G38280 52.427 1.49e-105 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc120833g00040 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00040 - - aip:107619931 1159.82