Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00037 ATGGGAGCAGCAACAGAAAGAATTCGCAGCCGAAAGAAGACATCATCTAGAGGACACCACAAATTTGTAGGTGTTCGTCAGAGGCCTTCAGGGAGATGGGTGGCAGAGATCAAAGATTCATTGCAGAAGGTTAGGCTCTGGCTTGGAACATTCGACACGGCTGAGGACGCTGCTAGAGCTTATGACACTGCTGCAAGAGCCTTAAGAGGTGCCAATGCAAGGACAAACTTTGAGTTGCCTCCAGAGTCTGGTGGGACCGCTTCGAAGCGCGGTGCTGGTTCTGGCTTTGTTCCTGATAGCTCTGAGCCTTTCTCATTCGAGGATTCGAGTGAGAGTGTGGGTGATGGTGATGGTCTTCTTGGTGCACTCAAGGCAAAGCTGTTTGATGGAAAGGGAGGAGGAGGGAGGTTTCCTCAGCCACTTCTGGCAAAATCCGCGGCTTCAGCCCCGGTTGTTCAATCAAGCATGGTTTCAAGATCAGCTCAGAATAATCAGAACTGTTCTGGGAAGAATAAAGAGTTGTTTTCTTCATCAGTGATCCCTAAGATGAATGCTACTACTACTACTAATAATAATAATTTTAATTTAACTTGCACCACAAGCAATAGTAGTTTGCCATGTTTGATTAGTACTTCGTCAAACACTTGTTCTAAGAGTGTGATTATCCCTTCTGCTAATGATGATCATGAAGGAAATTTAACAATAAGCAGTGGTGGAGCCATTAATTCTTATCATCAATTTTGTCAAACACCATCACCTATGACTACAGCATGGTCAAATAATGAAGTATCATATGAATTTCCATGGATTACTCATCATCATAATGAGAACAGTTTTCTTGCATCTTCAAGCACAGCAACTCTTACATGGCCTAATCTTGCAGTTTCAGGGGTAAATGAGTCAAATACTGTTGATAATATGGGATATACTACAGATCATCATAATAGCAGCAGGAATAATAGCCAAATGAATATGAGTAGCAGCATGCAATATCCTCTGATTGGTGGAGCAAGTAATGAAGGATTTTGGACATTGGAGCAGCAACAATTCCTTCAATGTGAAGGCACCAACTGGTTTGCTTCTAATGCCTCTTGGGATCCTCTTCTCTTTGTGCCCTCCGATCTATAG 1128 0.4291 MGAATERIRSRKKTSSRGHHKFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDTAARALRGANARTNFELPPESGGTASKRGAGSGFVPDSSEPFSFEDSSESVGDGDGLLGALKAKLFDGKGGGGRFPQPLLAKSAASAPVVQSSMVSRSAQNNQNCSGKNKELFSSSVIPKMNATTTTNNNNFNLTCTTSNSSLPCLISTSSNTCSKSVIIPSANDDHEGNLTISSGGAINSYHQFCQTPSPMTTAWSNNEVSYEFPWITHHHNENSFLASSSTATLTWPNLAVSGVNESNTVDNMGYTTDHHNSSRNNSQMNMSSSMQYPLIGGASNEGFWTLEQQQFLQCEGTNWFASNASWDPLLFVPSDL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00037 375 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Stsc120833g00037 375 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Stsc120833g00037 375 MobiDBLite consensus disorder prediction 72 112 - -
Stsc120833g00037 375 FunFam ethylene-responsive transcription factor RAP2-11 20 79 - -
Stsc120833g00037 375 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Stsc120833g00037 375 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Stsc120833g00037 375 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Stsc120833g00037 375 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Stsc120833g00037 375 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Stsc120833g00037 375 MobiDBLite consensus disorder prediction 1 25 - -
Stsc120833g00037 375 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Stsc120833g00037 375 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00037 Stsc-Chr120833 167871 168998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00037 9 77 AP2-EREBP Transcription Factor Family AT5G19790 68.571 7.81e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc120833g00037 AP2 4.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00037 - - gmx:102661478 314.694