Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00025 ATGGCATGCTTAGTTCTGTGTGAAGTGAACATCAGCACTGATGATGAACATGCTCTTCTTGCATTCAAGTCTTCCATTACTTCAGACCCCAAAAATCTCATGCTTAGTAATTGGTCAACCTCATCATCATCTTCTTCTTCTTCTTCTTCTCTGTGCAACTGGGTTGGTGTTACATGTGATTTTGGTAATGGAAGAGTGAAGTCTTTGAATCTCAGCAACATGGGGCTTGTAGGTACCATTCCTCCAGAAGTAGGGAGCCTCTCATTCCTTGAGGAGCTTGATCTCAAAGGAAACAGCTTCCATGGTGAGTTGCCACATGAGTTGTATCAGTTACAACAACTGAAGTTGCTCAACCTCAGTTATAACAACTTTGATGGCTTCATTTTGGACTCAATCTCCAACTTGTCTAAGTTGGTGTACTTGGACTGTTCATCAAGTTTCAGCAAAGGATCCAATACTATTCTACCAATCATTGGACAGCTTCAACATTTGAAGGTTCTGAGTTTAGAAAACAACTCTCTTTCAGGATTCATTCCACCAGAGGTATCTAATCTCTCTTCACTTGAAGTAATCAACCTTGGTTATAACTCCTTATCAGGTGAGATTCCAGTGTCTGTGTTGAACATCTCTTCACTGAGGCATTTCAGTGCTGGCAACAACAATTTAAATGGAACTCTCCCAAATGAGCTGTGTCATCAGGTTCCTCAACTTCAATACCTTCTTTTGGATTATAACCAATTTGAGGGAACCATTCCAGCATCAATTGGTAACTGCACATCTCTTGTACTATTAAGTTTATCCAATAACTTCTTCACAGGTTCAATACCCATGGAGATTGGAAATCTTGGTAAATTTGAGCATCTTGCTGTGGGATTTAACAATTTGAGTGGACCAATTCCACCAAAGATCTTCAACATTTCAACATTGAAATACTTGTATCTTTCATACAATTCTCTGTCAGGTACTATACCATCACAAATGGGGTATACTCTGCCTAACTTGGTGCAGCTACACTTAACTGGGAACAAGCTTGTTGGAACCATTCCAAATGGTTTATTCAATGCTACTTTGCTCACTAAAATCGACTTGAGTGAGAACCAATTCAATGGACTCATGCCTACTGGATTTCGATATCTAACAATCCTTGAAGTTCTTCATATAGGTGGCAATAATTTGACAACTCATGATGATTCTCATGAACTTGAATTCCTTACATCCTTGACAAGTTCTACACAGTTGAAGCGTATTGTAGTAACTGGCAATCCTTTAAAGGCTAGTGTTCCTAAGTCGATTGCAAACTTATCGAAGTCACTAGAACTTTTTCAAGCAGATCACTGCAGAATTTATGGAAAAATTCCATTGGAAATTGGAAACATAAGTGGCTTGTTGAATTTAAATTTGTATGGGAATGATATAAGTGGACCAATTCCTACTACAATTAAAGGGTTACAGAAGCTTCAGTCTTTGAATTTGAGCTACAATGAATTGCAGGGATCCATCATAGATGAGCTTTGTGAAATTGGGAGCTTAAGTGTGTTGTCTCTATCAAGTAATAAGCTATCTGGAGTTATACCAACATGCTTGGGAAATATGGCTTCTCTTAGAATGGTTTACATGGATTCTAACAAACTGATATCAGAGATACCATCTTCTTTTTGGAATCTCAAGGATGTCTTAGAGGTAAATTTATCATCTAATGCTCTAGTTGGAGAACTTCCATCTGATATAGGAAGACTGAGAGCTCTTGTTCTATTGGATCTATCAAAAAATGAGTTTTCAGGCAACATTCCAACAACCATAAGTTCCTTGGGAACTCTGCAAAATCTGTACTTGGCAAGCAACAAACTTCAAGGGTCCATTCCTCCATCATTTGGCGAAATGGTAAGCTTAAGCTCACTGGACTTGTCTCAAAATCTTTTGTCAGGTGTGATTCCAAAATCCTTAGAGTCACTTATTTATCTTAAATACATCAACTTGTCTTATAATAAATTGCAAGGAGAGATTCCTAATGGTGGACCATTTGTAAATTTCACTGCTCAATCTTTCATGCATAATGAAGCACTTTGTGGTAGTAATCCTCACCTATTGGTCCCTCCATGTGCTAAGAAAGATAGGCAAAGATCAAGGACAATGTTGCTTTTGGTCAAATGCATTCCACCTATAATTGTGTCAATCATTTTGGTTGTTATATTCATAGTAGTTCTGCATTATAAGAGGAAAAATGTTAAGACTCATCTTGAGAGAAATTTATCAGCTTTGGAAACAATCAGGCTTTCCTACTATGAACTTGTAAGAGCAACTAATGGATTTAGTGAGAGTAATTTAATTGGAAAGGGTGGATTTGGTTCTGTATATCAAGGGAAGCTCTCTAGTGGGTTGATAGTTGCAATTAAAGTGCTTGATTTGGATCTGGAAGAAACATCAAGGAGTTTTGAAGTGGAATGCAATGCAATGCGAAATCTGCGCCATCGAAATCTTGTTAAGATTATTAGCAGTTGTTCAAATGATGATTTCAAGTCTCTGGTAATGGAGTTTATGCCAAATGGAAGTCTTGACAAATGGTTGTACTCACATGACTATTGTTTAGATTTCTTTCAAAGGTTGAGTATGGTGTTAGATGTGGCTTCCGCATTGGAATATCTGCATCATGGTTTTTCAATTCCAGTAGTTCACTGTGACTTGAAGCCTAGTAATGTTTTATTAGATGAAGACATGGTGGCACATGTAAGTGATTTTGGCATTGCTAAACTCTTGGATAAGGGACAATCTAAGGTTCATACAAGGACATACTTAGCCACTGTTGGCTATGTTGCACCAGAATATGGATCTATGGGAATTATTTCTGTCAAGGGAGATGTGTATAGCTATGGAATTATGTTAATGGAAGTCTTCACAAGAAAGATGCCTACGGATGATATGTTTGCTGCAGAATTGAGCTTGAAAAGTTGGATTGAAGAGTTACTGCCAAATTCAATCATAGAAGTTGTGGATTACAATTTAGTACAGTTATATGGTGAACAAATTGATAGTATATTGCCCCATATATCATGTATATTAGAATTAGCTTTGAGTTGTTGTGTAAATCCACCTGAAGAACGAATTACAATGACAGATGTGGTTGTGTCATTAACCAAGATCAAGAATTTGTTCACACAAGAAAACTAA 3165 0.3731 MACLVLCEVNISTDDEHALLAFKSSITSDPKNLMLSNWSTSSSSSSSSSSLCNWVGVTCDFGNGRVKSLNLSNMGLVGTIPPEVGSLSFLEELDLKGNSFHGELPHELYQLQQLKLLNLSYNNFDGFILDSISNLSKLVYLDCSSSFSKGSNTILPIIGQLQHLKVLSLENNSLSGFIPPEVSNLSSLEVINLGYNSLSGEIPVSVLNISSLRHFSAGNNNLNGTLPNELCHQVPQLQYLLLDYNQFEGTIPASIGNCTSLVLLSLSNNFFTGSIPMEIGNLGKFEHLAVGFNNLSGPIPPKIFNISTLKYLYLSYNSLSGTIPSQMGYTLPNLVQLHLTGNKLVGTIPNGLFNATLLTKIDLSENQFNGLMPTGFRYLTILEVLHIGGNNLTTHDDSHELEFLTSLTSSTQLKRIVVTGNPLKASVPKSIANLSKSLELFQADHCRIYGKIPLEIGNISGLLNLNLYGNDISGPIPTTIKGLQKLQSLNLSYNELQGSIIDELCEIGSLSVLSLSSNKLSGVIPTCLGNMASLRMVYMDSNKLISEIPSSFWNLKDVLEVNLSSNALVGELPSDIGRLRALVLLDLSKNEFSGNIPTTISSLGTLQNLYLASNKLQGSIPPSFGEMVSLSSLDLSQNLLSGVIPKSLESLIYLKYINLSYNKLQGEIPNGGPFVNFTAQSFMHNEALCGSNPHLLVPPCAKKDRQRSRTMLLLVKCIPPIIVSIILVVIFIVVLHYKRKNVKTHLERNLSALETIRLSYYELVRATNGFSESNLIGKGGFGSVYQGKLSSGLIVAIKVLDLDLEETSRSFEVECNAMRNLRHRNLVKIISSCSNDDFKSLVMEFMPNGSLDKWLYSHDYCLDFFQRLSMVLDVASALEYLHHGFSIPVVHCDLKPSNVLLDEDMVAHVSDFGIAKLLDKGQSKVHTRTYLATVGYVAPEYGSMGIISVKGDVYSYGIMLMEVFTRKMPTDDMFAAELSLKSWIEELLPNSIIEVVDYNLVQLYGEQIDSILPHISCILELALSCCVNPPEERITMTDVVVSLTKIKNLFTQEN 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00025 1054 Gene3D Ribonuclease Inhibitor 330 399 IPR032675 -
Stsc120833g00025 1054 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 237 408 - -
Stsc120833g00025 1054 Pfam Leucine rich repeat N-terminal domain 14 60 IPR013210 -
Stsc120833g00025 1054 SUPERFAMILY Protein kinase-like (PK-like) 748 1043 IPR011009 -
Stsc120833g00025 1054 SUPERFAMILY L domain-like 413 691 - -
Stsc120833g00025 1054 FunFam Serine-threonine protein kinase plant-type 751 845 - -
Stsc120833g00025 1054 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 846 1054 - -
Stsc120833g00025 1054 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 156 236 - -
Stsc120833g00025 1054 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 409 704 - -
Stsc120833g00025 1054 SMART serkin_6 770 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00025 1054 Gene3D Ribonuclease Inhibitor 11 149 IPR032675 -
Stsc120833g00025 1054 Gene3D Phosphorylase Kinase; domain 1 732 845 - -
Stsc120833g00025 1054 Pfam Protein kinase domain 771 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00025 1054 Pfam Leucine Rich Repeat 163 185 IPR001611 GO:0005515
Stsc120833g00025 1054 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515
Stsc120833g00025 1054 ProSiteProfiles Protein kinase domain profile. 770 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00025 1054 SMART LRR_typ_2 507 530 IPR003591 -
Stsc120833g00025 1054 SMART LRR_typ_2 161 185 IPR003591 -
Stsc120833g00025 1054 SMART LRR_typ_2 555 579 IPR003591 -
Stsc120833g00025 1054 SMART LRR_typ_2 87 111 IPR003591 -
Stsc120833g00025 1054 SMART LRR_typ_2 356 378 IPR003591 -
Stsc120833g00025 1054 SMART LRR_typ_2 603 626 IPR003591 -
Stsc120833g00025 1054 SMART LRR_typ_2 531 554 IPR003591 -
Stsc120833g00025 1054 SMART LRR_typ_2 627 650 IPR003591 -
Stsc120833g00025 1054 SMART LRR_typ_2 331 355 IPR003591 -
Stsc120833g00025 1054 SMART LRR_typ_2 234 258 IPR003591 -
Stsc120833g00025 1054 SUPERFAMILY L domain-like 42 407 - -
Stsc120833g00025 1054 FunFam Nuclear pore complex protein NUP107 12 151 - -
Stsc120833g00025 1054 ProSitePatterns Protein kinases ATP-binding region signature. 776 798 IPR017441 GO:0005524
Stsc120833g00025 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Stsc120833g00025 1054 PANTHER OS04G0122200 PROTEIN 280 1047 - -
Stsc120833g00025 1054 Gene3D Ribonuclease Inhibitor 400 709 IPR032675 -
Stsc120833g00025 1054 Pfam Leucine rich repeat 605 664 IPR001611 GO:0005515
Stsc120833g00025 1054 Pfam Leucine rich repeat 287 344 IPR001611 GO:0005515
Stsc120833g00025 1054 Gene3D Ribonuclease Inhibitor 150 232 IPR032675 -
Stsc120833g00025 1054 Gene3D Ribonuclease Inhibitor 233 329 IPR032675 -
Stsc120833g00025 1054 Gene3D Transferase(Phosphotransferase) domain 1 846 1054 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00025 Stsc-Chr120833 123137 126746 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00025 392 688 Receptor kinase-like Gene Family AT3G47570 29.836 3.49e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc120833g00025 Pkinase 3.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00025 - K13420 vvo:131644871 1051.58