Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00023 ATGGCCAAACTGCGATACTCTTTCGGTCTCTCTATTTTCATCTTCTCATCACTCTTTTACTTCATAGGTTGCTGCCTAGCTCTGCCTCTGATGAGTAGTAGTAGTAGAAAGAACATGAGCACCGATGAACATGCTCTTCTTGCATTCAAGTCCTCCATTACTTCAGATCCTTATCTTATTCTGAGTAACTGGTCAACAACCTCATCATCATCATCTTCTCCTTCTTTGTGCAATTGGGTTGGTGTCACTTGTGATGTACTTCATGCAAGAGTAAGCTCTTTGAATCTGAGTAGAATGGGGCTTGTAGGTACCATACCTCCACATGTGGGGAACCTATCCTTCCTTAAGGAGCTTGACCTTGAACACAACAGCTTCCATGGTGAGTGGCCACGTGAGTTGTTTCGACTTCATCGACTAAGGTTGCTTGACTTGGGCCACAACAAGATTGGTGGTTTCATACCAGAATATTTGTCCAATCTATCCAAGTTGGAACACTTGGACTGTACAGCAAATCTCTTCATAGGAACCATTCCAACTGTGATTGGCCAACTTCGCCACTTGAAGGTTTTGAGCTTTGGAAACAACACTCTTTCTGGACCCTTACCTCCAACAATCTCCAACCTCTCTTCTCTTGAGGAGATCAACTTATCTTTCAACAATTTATCAGGAGAAATACCAAGAGGGATGGGTGATCTTGGTCAACTGAGACTAGTGGACCTTGAAAATAATGAGCTTTCTGGCAGTATACCATCATCAATGTTTAACAACTCAATGTTGCAAATTCTTAATCTGGGTTCCAACAATCTGTCCGGCATTCTTCCATCAAATATCTGTCAAGGGCTTCCAGAGATTACAATTCTCTATCTTTACATCAATGATCTTTCTGGTAAAATGCCAACTGTTTGGAATCAATGCAAAGAGTTGGTAGATTTAGAACTTTCCCTCAATAGTTTCAAAGGCCCCCTACCACAGGACATCAAAAACATCCCCAATCTTCAATATTTGTACTTTTATAACAGTAACTTACAAGGTGAGATTCCATTTTCCCTTCTAAACATGAGTTCTTTGAGGGAGGTGAATCTAGACAAGAACCAATTAAATGGAAGTTTATCACATGAGATGTGTCATCAGTCTTCCAAAATTGAAGCATTCAGTATATATGGGAATAAACTAGAGGGAAGTATTCCACCATTAATTGGCAACTGCACATCATTGACGTTCCTTCAGTTGGGAGCCAACTTTTTGACAGGTCCCATACCAGTGGAGATAAGCAATCTTGGCCAACTTCAGGATCTTGAATTTGGAAATAACAGATTGAGCGGATCTATTCCTTCAAAAATCTTCAACATTTCAACATTGTTAGATTTGTATCTTGGAGGCAATTCTATCTCTGGAACTCTTCCATCAAACATGGGGAATCACCTACCTAACCTAGAAGAGCTGCATTTGTATGGAAACGAACTTGTCGGAAATATTCCAAATGCTTTAACCAATGCCTCCATGCTCACCAAGATTGACTTGAGTGACAATGAACTTAGTGGAATCATACCCAACACATTTGGAAATTTAATAGCCCTCAAATGGCTCTTACTAGCTGGCAACAATTTGACAACCAGTGATTTTCATGAGCTTAACTTCCTTACTTCCTTGACAAAATGTAAATATCTAAAATATTTAGAAGTAAGTGAAAATCCTCTACAGATAAGTCTTCCCAAATCAATTGGAAACTTATCCAACTCTTTACGATACATTACAGCATACTTTTGTAGAATTCTTGGCAGTATTCCACCTGAAATCGGAAATTTGAGCAGCTTGTTGTCGTTATCTTTGGATGGGAATGATATAAGTGGACCTATACCTGTAACAATCAATGGTTTACATAATCTTCAATCTTTGGGGTTAAGTAACAACAGATTGCAGGGATCCATCATTGATGAGCTTTGTGAAATTCCTAGTTTAAGTGAGCTAAGTTTATCAAGCAACAAGCTTTCTGGAGCAATACCAACATGCTTGGGAAATATGGCTTCTCTCAGAATGATTTACATGGATTCTAATAAATTGAACTCAGGGATTCCATCTTCTTTTTGGTATCTCAATGACATCTTAGAGGTGGACCTGTCCTCTAATGCTTTAGTGGGACAACTTCCACCTGAGATAGGAAAATTGAGAGCAATTGTGCTATTGGATCTATCAAGAAATGAGTTTTCAGGCAACATTCCTGCAGCAATAAGTTCACTAGGAACTCTGCAAAATCTTTCCTTGGCTGGAAACAAGTTGCAAGGCTCCATTCCTGAATCACTTGGTCAATTGGTAAGCTTGAATTCCTTGGACTTGTCCCAAAATCATTTGTCCGGTTCGATTCCAAAATCCTTGGAGTCCCTTGCTTTTCTTCAGTACATCAACTTGTCCTACAATAACTTGCAAGGAGAGATTCCCAATGGTGGACCTTTTACAAATTTCACTGCTCAATCTTTCATGCATAATGAAGCACTCTGTGGCAACCCTCGCTTACAAGTCCATCCATGCGATAAACAAGGTGGCAAAAGATCAAGGGTCAAGCTGATTTTAGCCGTTTGCATACCGCTGGTAATAGTGTCAATCATTTTGGTTGTTGCATGCATAATTGTTCGCCGACGTAGAGTAAAAGATGTTGGGAGCCCAGTTGAAAAGAATTCATCAGACATGGGAGCAGCAAAGAGGATTTCCTATTATGAACTTGTGCAGGCTACCAATGGATTTAATGAGAGTAACTTAATTGGAAAGGGAGGTTTCGGTTCTGTGTATCAAGGGATGCTCTCCAATGGGATGATGGTTGCAGTTAAAGTGCTTAACGTGGACCTGGAAGCAACATCCAAGAGCTTTGATGCAGAATGCAATGCAATGCGCAACTTACGCCATAGAAATCTTGTTAAGGTTATTACCAGTTGCTCAAATGATGATTTCAAATCCTTGGTGATGGAGTTCATGCCAAATGGAAGCCTGGACAAATGGTTGTATTCACATAACTATTGCCTAGATTTCTTGCAAAGGTTGAACATAATGTTAGATGTGGCATCTGCATTGGAATATCTCCATTATGGTTCTTCAATACCAGTTGTTCATTGTGACCTGAAGCCTAGTAATGTTTTACTGGATAAAGATATGGTTGCACATGTCAGTGACTTTGGGATTGCTAAGCTCTTGGATGAGGGACAATCTAAAACACATACTGAGACCTTGGCTACCTTGCACCAGAGTATGGGTCTACAGGAACTGTATCTGTTAAAGGAGATGTGTACAGTTATGGAATTGTACTAA 3297 0.3988 MAKLRYSFGLSIFIFSSLFYFIGCCLALPLMSSSSRKNMSTDEHALLAFKSSITSDPYLILSNWSTTSSSSSSPSLCNWVGVTCDVLHARVSSLNLSRMGLVGTIPPHVGNLSFLKELDLEHNSFHGEWPRELFRLHRLRLLDLGHNKIGGFIPEYLSNLSKLEHLDCTANLFIGTIPTVIGQLRHLKVLSFGNNTLSGPLPPTISNLSSLEEINLSFNNLSGEIPRGMGDLGQLRLVDLENNELSGSIPSSMFNNSMLQILNLGSNNLSGILPSNICQGLPEITILYLYINDLSGKMPTVWNQCKELVDLELSLNSFKGPLPQDIKNIPNLQYLYFYNSNLQGEIPFSLLNMSSLREVNLDKNQLNGSLSHEMCHQSSKIEAFSIYGNKLEGSIPPLIGNCTSLTFLQLGANFLTGPIPVEISNLGQLQDLEFGNNRLSGSIPSKIFNISTLLDLYLGGNSISGTLPSNMGNHLPNLEELHLYGNELVGNIPNALTNASMLTKIDLSDNELSGIIPNTFGNLIALKWLLLAGNNLTTSDFHELNFLTSLTKCKYLKYLEVSENPLQISLPKSIGNLSNSLRYITAYFCRILGSIPPEIGNLSSLLSLSLDGNDISGPIPVTINGLHNLQSLGLSNNRLQGSIIDELCEIPSLSELSLSSNKLSGAIPTCLGNMASLRMIYMDSNKLNSGIPSSFWYLNDILEVDLSSNALVGQLPPEIGKLRAIVLLDLSRNEFSGNIPAAISSLGTLQNLSLAGNKLQGSIPESLGQLVSLNSLDLSQNHLSGSIPKSLESLAFLQYINLSYNNLQGEIPNGGPFTNFTAQSFMHNEALCGNPRLQVHPCDKQGGKRSRVKLILAVCIPLVIVSIILVVACIIVRRRRVKDVGSPVEKNSSDMGAAKRISYYELVQATNGFNESNLIGKGGFGSVYQGMLSNGMMVAVKVLNVDLEATSKSFDAECNAMRNLRHRNLVKVITSCSNDDFKSLVMEFMPNGSLDKWLYSHNYCLDFLQRLNIMLDVASALEYLHYGSSIPVVHCDLKPSNVLLDKDMVAHVSDFGIAKLLDEGQSKTHTETLATLHQSMGLQELYLLKEMCTVMELY 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00023 1098 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 86 280 - -
Stsc120833g00023 1098 SMART LRR_typ_2 232 256 IPR003591 -
Stsc120833g00023 1098 SMART LRR_typ_2 426 450 IPR003591 -
Stsc120833g00023 1098 SMART LRR_typ_2 353 377 IPR003591 -
Stsc120833g00023 1098 SMART LRR_typ_2 475 499 IPR003591 -
Stsc120833g00023 1098 SMART LRR_typ_2 136 160 IPR003591 -
Stsc120833g00023 1098 SMART LRR_typ_2 208 231 IPR003591 -
Stsc120833g00023 1098 SMART LRR_typ_2 746 769 IPR003591 -
Stsc120833g00023 1098 SMART LRR_typ_2 770 798 IPR003591 -
Stsc120833g00023 1098 SMART LRR_typ_2 500 522 IPR003591 -
Stsc120833g00023 1098 SMART LRR_typ_2 602 626 IPR003591 -
Stsc120833g00023 1098 SMART LRR_typ_2 257 280 IPR003591 -
Stsc120833g00023 1098 SMART LRR_typ_2 650 674 IPR003591 -
Stsc120833g00023 1098 PRINTS Leucine-rich repeat signature 770 783 - -
Stsc120833g00023 1098 PRINTS Leucine-rich repeat signature 502 515 - -
Stsc120833g00023 1098 SUPERFAMILY Protein kinase-like (PK-like) 895 1069 IPR011009 -
Stsc120833g00023 1098 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1032 1044 IPR008271 GO:0004672|GO:0006468
Stsc120833g00023 1098 SUPERFAMILY RNI-like 280 591 - -
Stsc120833g00023 1098 Gene3D Ribonuclease Inhibitor 380 453 IPR032675 -
Stsc120833g00023 1098 Gene3D Ribonuclease Inhibitor 39 204 IPR032675 -
Stsc120833g00023 1098 ProSiteProfiles Protein kinase domain profile. 913 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00023 1098 SMART LRR_sd22_2 770 796 - -
Stsc120833g00023 1098 SMART LRR_sd22_2 626 649 - -
Stsc120833g00023 1098 SMART LRR_sd22_2 426 452 - -
Stsc120833g00023 1098 SMART LRR_sd22_2 136 162 - -
Stsc120833g00023 1098 SMART LRR_sd22_2 475 494 - -
Stsc120833g00023 1098 SMART LRR_sd22_2 553 579 - -
Stsc120833g00023 1098 SMART LRR_sd22_2 184 210 - -
Stsc120833g00023 1098 Pfam Leucine rich repeat N-terminal domain 41 85 IPR013210 -
Stsc120833g00023 1098 Gene3D Ribonuclease Inhibitor 454 542 IPR032675 -
Stsc120833g00023 1098 SUPERFAMILY L domain-like 580 835 - -
Stsc120833g00023 1098 Gene3D Ribonuclease Inhibitor 543 849 IPR032675 -
Stsc120833g00023 1098 ProSiteProfiles Leucine-rich repeat profile. 772 795 IPR001611 GO:0005515
Stsc120833g00023 1098 FunFam Os07g0541700 protein 989 1075 - -
Stsc120833g00023 1098 Gene3D Transferase(Phosphotransferase) domain 1 989 1084 - -
Stsc120833g00023 1098 Gene3D Ribonuclease Inhibitor 207 379 IPR032675 -
Stsc120833g00023 1098 Pfam Leucine Rich Repeat 502 523 IPR001611 GO:0005515
Stsc120833g00023 1098 SMART serkin_6 913 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00023 1098 FunFam Serine-threonine protein kinase plant-type 893 988 - -
Stsc120833g00023 1098 FunFam Leucine-rich repeat receptor-like protein kinase TDR 281 551 - -
Stsc120833g00023 1098 SUPERFAMILY L domain-like 67 370 - -
Stsc120833g00023 1098 ProSitePatterns Protein kinases ATP-binding region signature. 919 941 IPR017441 GO:0005524
Stsc120833g00023 1098 Pfam Protein kinase domain 914 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00023 1098 PANTHER OS04G0122200 PROTEIN 425 1075 - -
Stsc120833g00023 1098 Pfam Leucine rich repeat 748 807 IPR001611 GO:0005515
Stsc120833g00023 1098 Pfam Leucine rich repeat 651 711 IPR001611 GO:0005515
Stsc120833g00023 1098 Pfam Leucine rich repeat 115 172 IPR001611 GO:0005515
Stsc120833g00023 1098 Gene3D Phosphorylase Kinase; domain 1 894 988 - -
Stsc120833g00023 1098 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 552 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00023 Stsc-Chr120833 108052 112317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00023 593 831 Receptor kinase-like Gene Family AT3G47570 34.583 3.18e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc120833g00023 Pkinase 9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00023 - K13420 gmx:100784397 1056.2