Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00022 ATGGATATGGATCAAGCCGCAAGTGATGGGAGTGGTGAGGTAATGGATCCTGTTCATGAAAGGGTTGATGATAATTTGAGTCATGTAGCTGAAGGGGCTGGAGTAGGTAGGGGTAGCTTGGTTGAGAGAGATTCTATAAGTGGAGAAGTTGGAACTTCAGAACAAAAGGGTAAGGATTTGGGGTTAGAGAAGGAGTTAAAGGTGGAGCCTGAGGGAGTTGAGGGTGAGAAGAAGTGTGATCACCAGAAAAACAGTGATACAATGTCTCAGGTTGATCAAGGAACTAGTTATAATTCAAGCAATTTGGTTAATCAGCAAGTGCTTGAGACTCTGGTTGTAATAGAGCCTGTTCAGAGTGAGTGTGTTAATGGTGATCATAGGAAATTGGAGTTGAAAGTAAATGAATCAGGGTTGGGCAAAGTATCTGTTAGAGCCCCCAAAGGGGTTTCCGAAACGGATAAGAATTCATATGTGATTGATATAAAGCGTGGCAACCCCAAACGGTTTAGTGAGAGCTCTGAAGGTGAAAGGATTTGTAGGATTTGCCATCTTGCTTCAGGGCGGCCGTCAGATGCATCAGCTGTTGGCACTGCCAATGGTGCTACTAGTGATGATTTGGTTCCGCTTGGTTGTGCATGTAAGGATGAGCTTGGCATTGCTCATATTCATTGTGCTGAGGCCTGGTTCAAGCTTAAAGGAAATAGGTTATGTGAAATATGTGGCGAGACTGCGAAAAACGTGTCAGGTGTTGCTGATACCGGATTCATGGAAGAGTGGAATGAAGGGAGATTCATGGACCACAATAACACATCACGCAGGTTTGGTGGATGTTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTTGTAATTGCTTTTGTTCTTCCATGGTTTTTTCGTGTAAATATGTTCTAG 921 0.4387 MDMDQAASDGSGEVMDPVHERVDDNLSHVAEGAGVGRGSLVERDSISGEVGTSEQKGKDLGLEKELKVEPEGVEGEKKCDHQKNSDTMSQVDQGTSYNSSNLVNQQVLETLVVIEPVQSECVNGDHRKLELKVNESGLGKVSVRAPKGVSETDKNSYVIDIKRGNPKRFSESSEGERICRICHLASGRPSDASAVGTANGATSDDLVPLGCACKDELGIAHIHCAEAWFKLKGNRLCEICGETAKNVSGVADTGFMEEWNEGRFMDHNNTSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00022 306 SUPERFAMILY RING/U-box 174 243 - -
Stsc120833g00022 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 252 IPR013083 -
Stsc120833g00022 306 Pfam RING-variant domain 179 240 IPR011016 GO:0008270
Stsc120833g00022 306 MobiDBLite consensus disorder prediction 56 85 - -
Stsc120833g00022 306 MobiDBLite consensus disorder prediction 1 97 - -
Stsc120833g00022 306 SMART ringv_2 178 241 IPR011016 GO:0008270
Stsc120833g00022 306 ProSiteProfiles Zinc finger RING-CH-type profile. 171 247 IPR011016 GO:0008270
Stsc120833g00022 306 PANTHER ZINC FINGER, RING-CH-TYPE 71 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00022 Stsc-Chr120833 106104 108017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00022 156 305 C3H Transcription Factor Family AT5G05830 40.127 6.19e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00022 - - gmx:100791129 384.8