LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120833g00021	ATGGCTGTTGAAGGCAGTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTTGCTGCTTTGATGTCCATGAAGAATAAAATGAATGATGAATTGCACGTCTTGAATGGCTGGGATATTAATTCGGTTGACCCTTGCACTTGGAACATGGTTGGTTGCTCTGTTGAAGGTTATGTCATTTCCTTGGAAATGGCCAGTGCTGGTTTATCTGGAACTCTTTCGTCGGGAATTGGAAATTTGAGCCATCTCCGAACATTGTTACTGCAGAACAATCAGTTATCTGGTCCTATCCCAGCTGAGATAGGAAAGTTATCAGAGCTGCAAACTCTAGACCTTTCGAGTAACCAGTTTGTCGGTGAAATTCCTAGTTCTTTAGGCTTATTGTCTCAACTAAGTTACTTGAAGCTCAGCAAGAACAATCTATCTGGACAGATCCCTCCACTTGTTGCTAACTTGACAGGCCTTTCATTCTTGGACTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCAAAAGGTTACAGATCACGCATCCTCTATACATCTTACGTGGAGCAAGATTGTGAATTTGATATTGGTCATTTGAAGAGGTTCACCTTCCGCGAATTACAAATTGCTACTGGAAACTTCAGTCAGAAGAATATCCTTGGACAAGGAGGCTTTGGCATTGTCTACAAAGGATGCCTTACAAACAAAATGCTGGTGGCAGTGAAGAGGCTCAAAGATCCCAATTACACCGGAGAAATGCAATTTCAGACTGAAGTTGAGATGATCGGCTTGGCTGTGCATCGTAACCTTTTGCGCCTCTATGGATTTTGTATGACTCCAGATGAAAGGTTGCTTGTTTATCCCTACATGCCTAATGGCAGTGTTGCTGATCGCTTGAGAGACACTTGCAGAGAAAAGCCGTCTCTGGACTGGAACAGGCGAATGCGAGTTGCTGTTGGGGCTGCAAGGGGGCTACTGTATTTACATGAGCAGTGCAACCCCAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGCTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTCGGCCTTGCTAAGCTGTTGGATCAAAGGGATTCACATGTTACTACTGCAGTGAGGGGTACGGTCGGCCACATTGCCCCTGAGTATCTCTCCACTGGACAGTCTTCTGAGAAAACAGATGTTTTCGGATTTGGCATTTTACTTCTGGAGCTCATAACAGGACAAAAGGCACTTGATGCTGGGAATGGTCAAGTACAGAAGGGAATGATTCTAGATTGGGTTAAAACATTATTTGAGGAGAAGCGGCTGGAGGTGTTAGTTGATAGGGATCTAAGGGGATGTTTTGATCCAGTTGAGTTGGAAATGGCAGTGGAATTGTCTTTGCAGTGCACTCAGTCACTTCCAAGTCTGCGACCGAAGATGTCGGAAGTGTTGAAGATTCTAGAAGGCCTGGTTGGGCAGTCGGCGCAGGGGGAGGAGTCGCAAGGAGGGTCTAACTTATATGAAGAAAGAACATGCAGTTTCTCACAAAATTACAGCGATGTTCATGAAGAACCTTCCTTTGTTATTGAAGCCATTGAGCTTTCTGGACCAAGGTGA	1614	0.4436	MAVEGSDSLLSPKGVNYEVAALMSMKNKMNDELHVLNGWDINSVDPCTWNMVGCSVEGYVISLEMASAGLSGTLSSGIGNLSHLRTLLLQNNQLSGPIPAEIGKLSELQTLDLSSNQFVGEIPSSLGLLSQLSYLKLSKNNLSGQIPPLVANLTGLSFLDLSFNNLSGPTPKILAKGYRSRILYTSYVEQDCEFDIGHLKRFTFRELQIATGNFSQKNILGQGGFGIVYKGCLTNKMLVAVKRLKDPNYTGEMQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDTCREKPSLDWNRRMRVAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMILDWVKTLFEEKRLEVLVDRDLRGCFDPVELEMAVELSLQCTQSLPSLRPKMSEVLKILEGLVGQSAQGEESQGGSNLYEERTCSFSQNYSDVHEEPSFVIEAIELSGPR	537

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120833g00021	537	SUPERFAMILY	L domain-like	17	191	-	-
	Stsc120833g00021	537	FunFam	Nuclear pore complex protein NUP107	15	172	-	-
	Stsc120833g00021	537	Gene3D	Ribonuclease Inhibitor	15	188	IPR032675	-
	Stsc120833g00021	537	SMART	LRR_typ_2	153	176	IPR003591	-
	Stsc120833g00021	537	SMART	LRR_typ_2	105	129	IPR003591	-
	Stsc120833g00021	537	SMART	LRR_typ_2	81	104	IPR003591	-
	Stsc120833g00021	537	ProSiteProfiles	Protein kinase domain profile.	214	490	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120833g00021	537	Pfam	Leucine rich repeat N-terminal domain	16	55	IPR013210	-
	Stsc120833g00021	537	FunFam	Somatic embryogenesis receptor-like kinase 1	290	505	-	-
	Stsc120833g00021	537	Gene3D	Phosphorylase Kinase; domain 1	189	289	-	-
	Stsc120833g00021	537	Gene3D	Transferase(Phosphotransferase) domain 1	290	498	-	-
	Stsc120833g00021	537	ProSitePatterns	Protein kinases ATP-binding region signature.	220	242	IPR017441	GO:0005524
	Stsc120833g00021	537	SUPERFAMILY	Protein kinase-like (PK-like)	197	487	IPR011009	-
	Stsc120833g00021	537	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	336	348	IPR008271	GO:0004672\|GO:0006468
	Stsc120833g00021	537	Pfam	Protein kinase domain	215	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120833g00021	537	SMART	serkin_6	214	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120833g00021	537	FunFam	Somatic embryogenesis receptor kinase 1	184	289	-	-
	Stsc120833g00021	537	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	17	485	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120833g00021	Stsc-Chr120833	98870	101846	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120833g00021	23	537	Receptor kinase-like Gene Family	AT5G45780	65.232	0.0	708

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Stsc120833g00021		Pkinase	6e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120833g00021	-		-	ccaj:109812711	837.41