Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00010 ATGGGAATGAGATGGAGCACATTTAGATTTTGGCTCAGAATTTATGTTTGCTTAATTGCTCTTTTTGGAATCCAAGAGTGTTGGTCTCTCAATGATGAAGGAATAGCTTTGTTGGAGTTCCGAGCAAGAATAACTTCTGATCCTTATTTTGCTCTGGCAAATTGGGATCCAAATGATTGTGATCCCTGCAAGTGGTTTGGTGTTCATTGTGTTGATGGTAAAGTGCAATCATTGGACCTTAAAGGGCTATCTTTGGAGGGAATATTGGCTCCTGAGCTTGGAAAGCTTACTCACTTAAAATCTCTCGTGTTGCGCAAGAATAACTTCTCTGGAGCTATTCCGGAAGAACTCGGAGATCTAACCAAGCTGGAGCTATTGGATTTAAGAGAAAATAACTTGACTGGAATTGTGCCAATAGAAATTGTCAGGTTGATTTGTGACAATAACAATGAAGGTGGTGCTTCTCAATATGATGGAGACTTCACATTTCCCTCTAAATCACTACTCCTTGGCAATTTCTCAGCACCTCTAACAACATTGTTTACATGCATCAATAGAAAATTCGGACACTGTGTGTGGAAGAGCAACCTGAGGGAATGGAACGAACCGGATTCAATGGTTAACGAAATTAAAGTAACACTTGCAAAATACCTCAGCTCCCTTGTGCTGCAACTGTTTAAGCTAGGAAAGTATACCCTAGATGGCATTGATGAGAATTGTTGTGATCTTCTAACTGATTCTAATGAGATAGACAATGTTCAAAGTGTCCCAGTTCTAGAGAATTCAGCACGGAGGAAGCTACTTGATCAGTCTAGTAACCTTGCGGCCGCGCCATATAGTGGCAAGACTAATATAGGGATCAGCACTGATCCAGTTACACAAAGCAGTGGGGGGTTCCCAGCTGTGCCAGTTGCAAAACAGAAACAGAAACAGAATCAACCTTCACAGCTGCAGCCACCTCCTGATAATAATGCTGCTTCTTCTGGAGCAGATAAACCAAATCAGAAACCACATTCAGATAATGGTGCCTCAGGAAATTGGAGAAAGTATCTTATTATTATTGTATTTGTTCTTGTGTTGGTCATTGTTATCATGGTCATTATTTGCCTTTGGCGTAAAAGAGCAGCGAAGGTAATAAGACCATGGAAGACAGGAATAAGTGGACAGTTGCAGAGGGCATTCATAACAGGAGTCCCAAAGTTGAATAGAGATGAACTACAGACAGCTTGTGAGGATTTCAGCAATATTGTTAGTACTAATTATGATGAATGCATCATATACAAAGGAATCCTGTCCAATGGAGTTGAGATCGCCGTCGTTTCTACATTGATTAAATCTTCCCAAGAATGGACAAAGAACACAGAGATGAACTACCGGAGAAAGATTGATTCATTGTCCCGGGTAAACCACAAGAACTTTGTCAACCTTATTGGCTTCTGTGAGGAAGAAGAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCTAATGGAAACCTATTTGAGCATCTTCATGTTAGGGAAGTTGAACATCTCAAATGGAATGAAAGGATGAGGATTATCATGGGCACTTCCTATTGTCTTCAATACATGCACCATGACCTGAATCCACCAGTAACACATGCTGACCTTAATTCACGTTCTATCTTTTTGACAGATGACTTCGCCGCTAAGATTGCTCAGACCACATTCCGAAATATCGTGCCGGAGACAAACAAAGGGAAGAAAAGGAAATCTGAGTTGCCACCCCCTGATGATCCTGAAACCAATGTCTATTGCTTTGGGGTAGTGTTGCTTGAGATCATATCTGGGAGATTGCCTTACTCTGAAGAACATAGCAGCCTTCTTGATTGGGGTGCTGAGTACTTGAATGACAAGGGAAGCTTCAAATATCTGATTGATCCAAGTCTGCAATCTATGAAAGACAATGAACTTGATGTGATATGTGAGGTGATCAAAGAATGTATCCAACCTGATCCAAGGTTAAGACCAACAATGAGAGAAATCACTCTGAGATTAAGGGAAGTTCTTTGCATATCACCAGAGCAAGCAGTTCCAAGATTGTCTCCACTTTGGTGGGCTGAATTGGAGATCTTGTCGGTTGAAACCAATTAA 2115 0.4104 MGMRWSTFRFWLRIYVCLIALFGIQECWSLNDEGIALLEFRARITSDPYFALANWDPNDCDPCKWFGVHCVDGKVQSLDLKGLSLEGILAPELGKLTHLKSLVLRKNNFSGAIPEELGDLTKLELLDLRENNLTGIVPIEIVRLICDNNNEGGASQYDGDFTFPSKSLLLGNFSAPLTTLFTCINRKFGHCVWKSNLREWNEPDSMVNEIKVTLAKYLSSLVLQLFKLGKYTLDGIDENCCDLLTDSNEIDNVQSVPVLENSARRKLLDQSSNLAAAPYSGKTNIGISTDPVTQSSGGFPAVPVAKQKQKQNQPSQLQPPPDNNAASSGADKPNQKPHSDNGASGNWRKYLIIIVFVLVLVIVIMVIICLWRKRAAKVIRPWKTGISGQLQRAFITGVPKLNRDELQTACEDFSNIVSTNYDECIIYKGILSNGVEIAVVSTLIKSSQEWTKNTEMNYRRKIDSLSRVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGNLFEHLHVREVEHLKWNERMRIIMGTSYCLQYMHHDLNPPVTHADLNSRSIFLTDDFAAKIAQTTFRNIVPETNKGKKRKSELPPPDDPETNVYCFGVVLLEIISGRLPYSEEHSSLLDWGAEYLNDKGSFKYLIDPSLQSMKDNELDVICEVIKECIQPDPRLRPTMREITLRLREVLCISPEQAVPRLSPLWWAELEILSVETN 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00010 704 PANTHER PROTEIN MALE DISCOVERER 2 13 702 - -
Stsc120833g00010 704 MobiDBLite consensus disorder prediction 306 341 - -
Stsc120833g00010 704 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Stsc120833g00010 704 FunFam Inactive receptor-like serine/threonine-protein kinase 385 494 - -
Stsc120833g00010 704 FunFam Leucine-rich repeat receptor-like kinase 33 153 - -
Stsc120833g00010 704 Gene3D Ribonuclease Inhibitor 33 153 IPR032675 -
Stsc120833g00010 704 Gene3D Phosphorylase Kinase; domain 1 384 494 - -
Stsc120833g00010 704 Gene3D Transferase(Phosphotransferase) domain 1 495 681 - -
Stsc120833g00010 704 Pfam Protein tyrosine and serine/threonine kinase 426 671 IPR001245 GO:0004672|GO:0006468
Stsc120833g00010 704 MobiDBLite consensus disorder prediction 305 341 - -
Stsc120833g00010 704 SUPERFAMILY L domain-like 28 144 - -
Stsc120833g00010 704 ProSiteProfiles Protein kinase domain profile. 376 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00010 704 SUPERFAMILY Protein kinase-like (PK-like) 425 672 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00010 Stsc-Chr120833 54787 58237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00010 70 686 Receptor kinase-like Gene Family AT5G65700 25.846 5.08e-40 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Stsc120833g00010 PK_Tyr_Ser-Thr 1.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00010 - - adu:107468254 1170.22