Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00008 ATGTCTAAAGAATATGAGGATGAGAAGGAGAGGAGTGAAGGAGGAGAAGATTTAGATGAGGAAACTTGTTCATTGGGAAAATGCTCTTCATTTGATTTGAATGAAGAAGCAAGAAGCAGTGAAGAAGAAGAAGGTAATAAGAACGAGGATGAGGAGGCATGTGATGAAGAGGAGATGAATGAGAATGGAACATCAAATAATTCAAGAGAAGATAATAATGAAAGAAATAATAACAACAATGAGAGAAGAGGTGGAGTTAGGCAATATGTTAGATCGAAGATGCCGAGGCTTCGATGGACTCCTGAGCTTCATCTCTCTTTTGTTCATGCTGTTGAAAGACTTGGTGGTCAAGAGAGAGCAACACCTAAGTTGGTGCTTCAACTGATGAATGTGAGAGGCCTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTTTCGTAGCAAGAAACTTGATGAGGCCGGCCAAGTATTAGGTCAAACACAGAGATGGAGGCAAGAAGGAGTAGGACGAAGTAGAAGTCATGAGATGCTGAATCATCCTCATCAACATTTCAAGATGGGAAACGGTGGCATTATTCTAGCAACCAATTTCAATCATTTCCAACATTCTCTGATGCACCACCCCCACTTCTCCCTTTCATCACCTTCACATGCAAACCCCACCCACACAGGGCAACATCAATTGTATTTGAATCATCAAGGATTAAGAGTACCAAGCTATGGAACAAGCAACGAAATTGTGTCCTCAAGTAATCAAGCGATGATGGATACGTCCTGCAGAATTGCACCAATTAGACCAAGTCATTTCCTTGAAGAGAAGAAGTGGCCTCCCTTGCAAATTATGAACAATCATCATCAATGGAAGTTCAATAGTACTGAACCTCTTCAGCAGCCAAGTATGAGAGAGTATCTATCACCCTCCAAGCTAGAATTTGATCCTCCATTTCGGATAAAGTTGAATGAGGAGAAAAGGGAGAAAAAGGAGGAGGAGGAAGGGTTGCCTGATTTGAAACTAGGTTTGAGTCACGGCAGAGATGGAATTGGAAGTGATGATGATGATGATTGCAGAGAAACACATGAGATCAGCACTAAGCTTTCACTTTCATAG 1110 0.4162 MSKEYEDEKERSEGGEDLDEETCSLGKCSSFDLNEEARSSEEEEGNKNEDEEACDEEEMNENGTSNNSREDNNERNNNNNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMFRSKKLDEAGQVLGQTQRWRQEGVGRSRSHEMLNHPHQHFKMGNGGIILATNFNHFQHSLMHHPHFSLSSPSHANPTHTGQHQLYLNHQGLRVPSYGTSNEIVSSSNQAMMDTSCRIAPIRPSHFLEEKKWPPLQIMNNHHQWKFNSTEPLQQPSMREYLSPSKLEFDPPFRIKLNEEKREKKEEEEGLPDLKLGLSHGRDGIGSDDDDDCRETHEISTKLSLS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00008 369 MobiDBLite consensus disorder prediction 320 369 - -
Stsc120833g00008 369 MobiDBLite consensus disorder prediction 45 59 - -
Stsc120833g00008 369 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 150 IPR006447 GO:0003677
Stsc120833g00008 369 SUPERFAMILY Homeodomain-like 93 149 IPR009057 -
Stsc120833g00008 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 151 IPR017930 -
Stsc120833g00008 369 Coils Coil 40 60 - -
Stsc120833g00008 369 FunFam Myb family transcription factor 93 151 - -
Stsc120833g00008 369 Pfam Myb-like DNA-binding domain 97 145 IPR001005 -
Stsc120833g00008 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 72 196 IPR046955 GO:0003700
Stsc120833g00008 369 Gene3D - 94 151 - -
Stsc120833g00008 369 MobiDBLite consensus disorder prediction 1 23 - -
Stsc120833g00008 369 MobiDBLite consensus disorder prediction 1 89 - -
Stsc120833g00008 369 MobiDBLite consensus disorder prediction 320 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00008 Stsc-Chr120833 40981 43435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00008 86 156 G2-like Transcription Factor Family AT2G42660 76.056 5.16e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc120833g00008 Myb_DNA-binding 2.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00008 - - adu:107468251 450.284