Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120832g00048 ATGGTTGGTGGTGGTGGAAACGGAGAGAGACCGCCGTGGAAGGTGGAGAATATTGGCGGCGGCGTGGAGGAGCAGCCACCACAGAGACCGAGCATCACTCTTCCGCCACGTGGAGGCGGCGGCGGTTCCATGGAAAGTCTGTTCGGCGGCGGTTTCAGCCCTGGTCCGATGACACTAATCACAAGCTTGTTCGGCGGCGACGATGGGAATAAGTCGTTCTCTCAGCTGCTGGCCGGAGCCATGGCATCTCCGACGGCGGCGGTGGGGCCCAGTGCACTTATTGATTCTCCTTCTGCCTTCTTTTCATCTTCTGAGGTTCCCCAAGGAATGACACATCAAGAGGCACTAGCACAGGTCACTACTCAAGGAACACAACCATACTCAACTATGCAAGTCCAACCTCAGCATTCATTTCAAACAATGTCTGCTAGTACCTCATCATTTGCACAAGTTCCTGCTGCAAACACTTCCAACAACAATACTAATCCACACATGGCAGAGCCTTCTTCTTCTTTATTGAATGTCGATAAGCCTGCCGACGATGGATACAATTGGAGGAAGTATGGTCAAAAACAGGTGAAAGGTAGTGAGTTTCCAAGGAGTTACTACAAGTGCACTCATAAAAGCTGTCCTGTGAAGAAGAAAGTTGAGAGGTCACTAGATGGACACATCACTGCAATTATATATAAAGGAGAACACAATCACCAGCGCCCGAATAAGCGTTTGAAAGATGCCGCCATGGCTTCGAGTGAAGGCTCAAACATGCAAGGGAATGCTGATTATCATCATGGCCATGGGACAAGTGCTAGTCACTCTAAAATGGATGCAGAATCTAGTCATGCTACTGGTGAACATCTTTCAGGAACAAGTGATAGTGAGGAAGTTGGTGATCATGAAAATGAGGTGGATGACAAAATTGTTGAGCCTGTTCCCAAGAGGAGAAATACAGAGGTGACACACTCAGATCAAGATTCTTCACATAAGACAGTCACAGAGCCAAGAATCATTGTGCAAACAACAAGTGAAGTTGATCTCTTAGATGATGGCTATCGATGGCGAAAGTATGGACAAAAAGTTGTCAAAGGCAATCCTCATCCTAGGAGCTATTACAAATGTACAACACCGGGTTGTAATGTTAGAAAGCATGTTGAGAGAGCTTCAACAGATCCTAAAGCTGTCATAACAACATATGAAGGAAAGCATAACCATGATGTGCCAGCTGCAAAGACTAATAGCCACACTATTGCCAACAATAGTTCCTCACAATTTAAATCACAAAATAGTAATATACCTCAGATGCATGGTTTTGGAAGCAAAGGTATTGTGATTAATGATCAGCAGCAGCAACAACAACAACGGCCTGTGGCGCGTCTAAGGCTAAAGGAAGAACAGAGAACATAG 1401 0.4597 MVGGGGNGERPPWKVENIGGGVEEQPPQRPSITLPPRGGGGGSMESLFGGGFSPGPMTLITSLFGGDDGNKSFSQLLAGAMASPTAAVGPSALIDSPSAFFSSSEVPQGMTHQEALAQVTTQGTQPYSTMQVQPQHSFQTMSASTSSFAQVPAANTSNNNTNPHMAEPSSSLLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHKSCPVKKKVERSLDGHITAIIYKGEHNHQRPNKRLKDAAMASSEGSNMQGNADYHHGHGTSASHSKMDAESSHATGEHLSGTSDSEEVGDHENEVDDKIVEPVPKRRNTEVTHSDQDSSHKTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTIANNSSSQFKSQNSNIPQMHGFGSKGIVINDQQQQQQQRPVARLRLKEEQRT 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120832g00048 466 MobiDBLite consensus disorder prediction 249 289 - -
Stsc120832g00048 466 FunFam WRKY transcription factor 167 239 - -
Stsc120832g00048 466 ProSiteProfiles WRKY domain profile. 341 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120832g00048 466 MobiDBLite consensus disorder prediction 229 331 - -
Stsc120832g00048 466 MobiDBLite consensus disorder prediction 415 466 - -
Stsc120832g00048 466 MobiDBLite consensus disorder prediction 415 434 - -
Stsc120832g00048 466 MobiDBLite consensus disorder prediction 139 178 - -
Stsc120832g00048 466 SUPERFAMILY WRKY DNA-binding domain 338 406 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120832g00048 466 MobiDBLite consensus disorder prediction 139 169 - -
Stsc120832g00048 466 MobiDBLite consensus disorder prediction 290 329 - -
Stsc120832g00048 466 MobiDBLite consensus disorder prediction 1 44 - -
Stsc120832g00048 466 SUPERFAMILY WRKY DNA-binding domain 177 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120832g00048 466 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 112 429 IPR044810 GO:0003700
Stsc120832g00048 466 Gene3D WRKY domain 331 407 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120832g00048 466 Gene3D WRKY domain 169 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120832g00048 466 ProSiteProfiles WRKY domain profile. 180 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120832g00048 466 SMART WRKY_cls 346 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120832g00048 466 SMART WRKY_cls 179 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120832g00048 466 Pfam WRKY DNA -binding domain 180 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120832g00048 466 Pfam WRKY DNA -binding domain 347 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120832g00048 466 FunFam WRKY transcription factor 33 333 399 - -
Stsc120832g00048 466 MobiDBLite consensus disorder prediction 441 455 - -
Stsc120832g00048 466 MobiDBLite consensus disorder prediction 229 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120832g00048 Stsc-Chr120832 396248 403636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120832g00048 29 77 WRKY Transcription Factor Family AT2G03340 58.824 1.17e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc120832g00048 WRKY 9.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120832g00048 - - aip:107643570 811.601