Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120832g00034 ATGGAAGAAACACAAGATTCCACCACCAATGCTAACCAAAAACTCAACACCAAAAGGAGACCCTTCAGAAATGGACCAAACCCTCATGAACATCACCACCACCACCACCACCACCATCACCACCATCATCACCATCACTATAATCACCTCCACCACCACCATCAGCAGCAGCAGAATCTTCTACAGTACTCAACTCACCTTGGATTCTTCAACAACAACAACAGCAGCTATTATCAAAGATACTACCCAGCACTTCTTCCTCTACCTTCTCTCATACCCCTTCAACAACTACCCTTCACTCCTCCCATTCCTCAAAACCACTGCATCAAACCAAAAACCCATTTTCAGAAACCTCCATGCAAACTCAATAGCTCTCCCTCTTCAGATAACAAGTTCTCTCAACCAACACTGCTTGCTCTAGCTTCAAAGGAACTTGAACAGCAAACTATGGCATCTTTCAAAGGAGATCATGATGGGAAGACACTCATTCCTTCAAGGAAGCCTCCTCAGACAGTGATTGTTGCAAGGAGGCCGGATTCCGGTGGCAAAGAAGGTTCTGTGATCTCTCTTCTAGCCAACCACTTTTTGGTGCGGTTCGATCCGTCGCAAAAGATATATCATTACAATGTTGAGATCACTCCTAATCCCTCCAAGGATGTTGCAAGAGCAATCAAACAGAAACTGGTAGACAGAAATTCTGATGTCCTTTCCGGTGCTCTGCCAGCATATGATGGAAGGAAGAACCTTTATAGCCCGGTCGAGTTCCAAAACGATAAGCTCGAATTCTATATAAGCCTCCCAATTCCCATAAGCAAATTGTCTTCGAATTGTGGAGATGCGTTTGACCCGAAAGAGAAGCACGAAAAGCTCAAATTGTTTAGGATCAATGTCAAACTAGTCTCCAAGATCAATGGGAAGGAGCTAAGTAGCTACTTGAGCAAAGAGGGTGATGATTGGGTTCCCCTTCCACAGGATTATCTCCATGCTTTGGATGTAGTTCTGAGGGAAAGCCCGACCGAGAAATGCATACCTGTAGGGAGATCTTTCTACTCAATGGGAAGAAGCAAAGATATTGGTGGTGGAGCTGTTGGATTGAGAGAAGAGAGGAAGGAAGTGGAAAAGGCTTTGAAGAACATCAGGATCTTTGTTTGCCATAGAGAAACAGTTCAAAGGTACCGAGTCTACGGCTTAACTGAGGACATCACTGAAAATCTCTGGTTTGCAGACAGAGATGGAAGGAATCTGAGGCTTTTGACTTACTTCAAAGATCATTATAACTATGACATACAATTTAGGAAGCTTCCATGCTTGCAAATTAGCAGGAGTAAGCCTTGTTATCTCCCTATGGAGCTTTGTGTGATCTGTGAAGGCCAGAAGTTCCTCGGAAAACTCTCCGATGATCAAACAGCTAGAATTCTCAAGATGGGGTGCCAAAGACCAGGTGAAAGGAAAACCATCATTGAAGGAGTCATGAGAGGGCAAGTTGGACCTACCAGTGGAGACCAGGAAAGAGAATTCAAACTCAATGTCTCAAGAGAAATGACAAGATTAACTGGCAGAATTCTCCACCCTCCAAAGCTGAAGCTTGGAGAGGGAGGCCATGTGAGGAACCTCACTCCTTCGCGCCACGACCGGCAGTGGAACCTGCTTGACGGTCATGTTTTCGAAGGGACTAAAATCGAAAGGTGGGCGCTCATGAGTTTCGGCGGTACCCCTGAGCAGAAGTCCAGTATCCCCAGATTCATAAACCAGTTAACTCAAAGATGTGAGCAGCTGGGAATCTATCTCAACAAGAACACTGTCATTAGCCCCCAATTCGAATCGAGCCAGGTCCTAAACAGTGTCTCTCTTCTGGAATCAAAGCTCAAGAAAATACAGAGGAGTGCCTCAAACAACCTCCAGCTTCTGATCTGCATAATGGAGAGAAAACACAAAGGGTATGCAGACTTGAAGAGAATAGCCGAGACGAGTGTCGGCGTTGTAAGCCAATGCTGCCTGTATCCAAATCTAAGCAAGCTAAGTTCACAGTTCTTGGCAAATTTGGCCCTCAAAATCAATGCCAAAGTTGGTGGATGCACGGTTGCTCTCTACAACTCGCTGCCTTGTCAGATACCTCGCCTCTTCGGGATCGATGAGCCGGCTATCTTCATGGGAGCTGATGTGACACATCCTCACCCTCTTGATGATTCTAGTCCATCCGTTGCAGCTGTTGTTGGCAGCATGAATTGGCCAACAGCAAACAAGTACATCTCAAGAATAAGGTCTCAAACACACAGGCAAGAAATCATTCAGGATCTCGGCTCCATGGTCGGCGAGCTGCTCGAGGACTTCTACCAGGAAGTAGAGAAACTCCCCGGCCGGATAATCTTCTTTCGCGACGGTGTCAGCGAGACTCAGTTCTACAAAGTGCTCCAAGAGGAACTCCAGTCCATAAGAACAGCATGTTCCAAGTTCCCTGACTACAAACCTCTCATTACTTTTGCTGTGGTGCAGAAGAGGCACCACACAAGGTTGTTTCCCTTCGAAACCGACCAGTCATCGGCTCAGAACAATTTCTTATACGAAAACATCCCTCCGGGGACGGTGGTGGATTCGGTGATCACTCACCCGAAGGAATTCGACTTCTACCTATGCAGCCATTGGGGAGTTAAAGGAACAAGCAGGCCAACACATTACCATGTTTTGTGGGATGAAAACCAATTCACTTCAGATGAACTTCAGAAGCTAGTTTACAATCTGTGCTACACTTTTGTTAGGTGCACCAAACCAATTTCTTTGGTCCCTCCTGCATATTATGCACATTTAGCTGCATACAGAGGAAGACTCTACCTTGAAAGATCTTCAGAATCATTAGGTTTGTTTAAAGGTTCATCAACATTATCAAGAGCTGCTCCTCCAAAAACAGCACCTTTACCTAAACTTAGTGAAAATATCAAGAAGCTAATGTTCTATTGCTAG 2958 0.454 MEETQDSTTNANQKLNTKRRPFRNGPNPHEHHHHHHHHHHHHHHHHYNHLHHHHQQQQNLLQYSTHLGFFNNNNSSYYQRYYPALLPLPSLIPLQQLPFTPPIPQNHCIKPKTHFQKPPCKLNSSPSSDNKFSQPTLLALASKELEQQTMASFKGDHDGKTLIPSRKPPQTVIVARRPDSGGKEGSVISLLANHFLVRFDPSQKIYHYNVEITPNPSKDVARAIKQKLVDRNSDVLSGALPAYDGRKNLYSPVEFQNDKLEFYISLPIPISKLSSNCGDAFDPKEKHEKLKLFRINVKLVSKINGKELSSYLSKEGDDWVPLPQDYLHALDVVLRESPTEKCIPVGRSFYSMGRSKDIGGGAVGLREERKEVEKALKNIRIFVCHRETVQRYRVYGLTEDITENLWFADRDGRNLRLLTYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQRPGERKTIIEGVMRGQVGPTSGDQEREFKLNVSREMTRLTGRILHPPKLKLGEGGHVRNLTPSRHDRQWNLLDGHVFEGTKIERWALMSFGGTPEQKSSIPRFINQLTQRCEQLGIYLNKNTVISPQFESSQVLNSVSLLESKLKKIQRSASNNLQLLICIMERKHKGYADLKRIAETSVGVVSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVALYNSLPCQIPRLFGIDEPAIFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGSMVGELLEDFYQEVEKLPGRIIFFRDGVSETQFYKVLQEELQSIRTACSKFPDYKPLITFAVVQKRHHTRLFPFETDQSSAQNNFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSSESLGLFKGSSTLSRAAPPKTAPLPKLSENIKKLMFYC 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120832g00034 985 Pfam N-terminal domain of argonaute 188 334 IPR032474 -
Stsc120832g00034 985 MobiDBLite consensus disorder prediction 118 132 - -
Stsc120832g00034 985 MobiDBLite consensus disorder prediction 1 20 - -
Stsc120832g00034 985 SMART Piwi_a_2 635 945 IPR003165 GO:0003676
Stsc120832g00034 985 Gene3D - 709 985 IPR036397 GO:0003676
Stsc120832g00034 985 ProSiteProfiles PAZ domain profile. 366 456 IPR003100 GO:0005515
Stsc120832g00034 985 FunFam Argonaute 10 521 697 - -
Stsc120832g00034 985 Pfam Piwi domain 636 942 IPR003165 GO:0003676
Stsc120832g00034 985 SUPERFAMILY Ribonuclease H-like 620 945 IPR012337 -
Stsc120832g00034 985 CDD PAZ_argonaute_like 357 455 - -
Stsc120832g00034 985 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 169 360 - -
Stsc120832g00034 985 MobiDBLite consensus disorder prediction 25 53 - -
Stsc120832g00034 985 MobiDBLite consensus disorder prediction 108 132 - -
Stsc120832g00034 985 CDD Piwi_ago-like 504 944 IPR045246 -
Stsc120832g00034 985 MobiDBLite consensus disorder prediction 1 58 - -
Stsc120832g00034 985 FunFam protein argonaute 10-like 704 985 - -
Stsc120832g00034 985 Pfam PAZ domain 369 472 IPR003100 GO:0005515
Stsc120832g00034 985 FunFam Protein argonaute 7 363 460 - -
Stsc120832g00034 985 ProSiteProfiles Piwi domain profile. 635 945 IPR003165 GO:0003676
Stsc120832g00034 985 SUPERFAMILY PAZ domain 368 492 IPR036085 GO:0005515
Stsc120832g00034 985 Gene3D paz domain 364 459 - -
Stsc120832g00034 985 Gene3D - 521 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120832g00034 Stsc-Chr120832 252629 257426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120832g00034 124 985 Eukaryotic Initiation Factors Gene Family AT1G48410 38.140 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120832g00034 K11593 - gmx:100797755 1591.63