Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120832g00028 ATGGAAGCTTGCAGGAAGAGAAGGCGCTGCCCAAAGATCTTCAGCTTCCACTCCTTCGCCGATCCCGGCTGCCCCATTGCTCCCTCCGCCGCATTCCGCGACAACGTCAGATCCTTCCTCCGAGAGTGCGCCGAGCTCGAAGATTACGTTCTTCAGAACAACCCTCTCTGGTGCACGCTTTTGGTCAGCGACAAGACCAATCTCATGGCGCCTCTCTTCACCCTCGAAGAACAGGTTTCCCAATCTTCCCACCCTTTCTGCGATCATTGCCGCTCTGCAGGTTGGAGTGGTCACTTTGTGTCAAAGAGAAGGTATCATTTCATAATACCAATGGACAATGGGTGGAACAAACCCTTGCCTGAGGATGCTATTGATAATCAGGGCCACCTCTTGCATGGTGTGATTCATTGCAATGGCTATGGCCATTTGGTCTGCATTAATGGCATTGAAGGCGGTTCCAAGGTCCTCAGTGGTAGAGAGATCATGGATCTTTGGGACAGGATCTGCACAAACCTTGGAGCAAGGAAAATTTCCGTGGAAGATGTTTCAAGGAAGCGATCCATGGATCTTCGCCTACTTCATGGTGTTGCATATGGCCACTCATGGTTCGGTAGGTGGGGCTACAAGTTTTGTCGCGGAAGCTTTGGAGTGACAGGACAAACATACTATGAAGCAATTGAAGGTCTAGGTTCCTTAGAGCTTGATGAGATAATGAGAGATTTAAGCAAGACAAAGTTCCACAAAGAGATCAAACAAATCATCCGCAACTATAGAGACATGAGTGAAACTCAGATTACCACATTGAGAGATCTTCTAAGGTTCATGCTCACTGTCAAGTCTCGCGTCCCATTGTCCAAGATAACAATAAACTATGTAGCTCCTTCTTCAGCTTTCAACTCAAGAAATTCAACCAAACAAGCCTTCTTAAGTAGATCAAATCTGGCAAAAGAGAAGTCCGCGAAGTACAAGAAGTTCAGCATTGCAGTGGCTAATATGGATAGCAGGTGGCCAACAAGGAGGCTAGAGTTTGCCGCAAAGGTGATTGTTGATGCACTGAAAGAGCACAAGGCAATGAACTCGGGTTCAGATGGGATGACTCGGCAGGATGTGAGGGATGCATCTAGGCTTCATATTGGTGATACCGGCTTGCTCGATTATGTGCTGAAATCACTCAACAATGTGATCGTCGGAAACTATGTTGTTCGCCGCATGGTTAACCCCTCAACAAGGATCCTAGAATACACAATTCATGAGCCTGGTGGTGATGTTTATTCTGATGTGTTCTACCTATACAAAAATGTGCTATTGAGATACCCGAATTCAGAAACCGTGGACTTAGCAATTCAGACAATCCTTGATAGCCGGCATTTCGTTAAGGAATGGGATTACCTGGATGAGATGCAGCAGGTTTTGACATTCATTTGCCGGCTCAAACCGAATTTTGTTGATATTAAGGCTGATTTGAGTAGGGAGCTGCCTTGTGGGGAGATTGTGATGGTTCCTCTGCATGCAACGGTTAAAGACCTGAAGCAAGCTGCAGAGGCAGCACTGAGGGATACCTACTGCATTGCAGAGAGGCTCATAGTCACTGAGATCACTGAATTGAATGGTGCAAGTGATGATGAGGTGCTGTTTGGGTTAATCCAATCTGGAGTGGAGCTTTCTGTGAGGGGTATTTCCATTGATTTGTGCACTCCATTGAAGTTCCAAGGTGAATCCGACAATTGGATGGTGAGGTGTGAGTGTGGGGCGCAAGATGACGACGGCGAGAGAATGGTGGCCTGTGACATATGTGAGGTCTGGCAGCACACAAGGTGTTGTGGCATTGATGATTCTGAGACAGTACCACCTTTGTTTGTGTGCTCCAGCTGCTGTGATTCACTTGCCCCAACGCGGGTTGAGTCACCCTTTGCCATGGATTGTGTTGATGATTTCCTCGTCTCACCAGAGCCTACCATGTTTCTGGAATATGAATGTGGTTACTGA 1986 0.4713 MEACRKRRRCPKIFSFHSFADPGCPIAPSAAFRDNVRSFLRECAELEDYVLQNNPLWCTLLVSDKTNLMAPLFTLEEQVSQSSHPFCDHCRSAGWSGHFVSKRRYHFIIPMDNGWNKPLPEDAIDNQGHLLHGVIHCNGYGHLVCINGIEGGSKVLSGREIMDLWDRICTNLGARKISVEDVSRKRSMDLRLLHGVAYGHSWFGRWGYKFCRGSFGVTGQTYYEAIEGLGSLELDEIMRDLSKTKFHKEIKQIIRNYRDMSETQITTLRDLLRFMLTVKSRVPLSKITINYVAPSSAFNSRNSTKQAFLSRSNLAKEKSAKYKKFSIAVANMDSRWPTRRLEFAAKVIVDALKEHKAMNSGSDGMTRQDVRDASRLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHEPGGDVYSDVFYLYKNVLLRYPNSETVDLAIQTILDSRHFVKEWDYLDEMQQVLTFICRLKPNFVDIKADLSRELPCGEIVMVPLHATVKDLKQAAEAALRDTYCIAERLIVTEITELNGASDDEVLFGLIQSGVELSVRGISIDLCTPLKFQGESDNWMVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCSSCCDSLAPTRVESPFAMDCVDDFLVSPEPTMFLEYECGY 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120832g00028 661 CDD PHD_MMD1_like 580 624 - -
Stsc120832g00028 661 ProSitePatterns Zinc finger PHD-type signature. 580 624 IPR019786 -
Stsc120832g00028 661 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 5 418 - -
Stsc120832g00028 661 SUPERFAMILY FYVE/PHD zinc finger 571 629 IPR011011 -
Stsc120832g00028 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 567 629 IPR013083 -
Stsc120832g00028 661 Pfam PHD-finger 579 625 IPR019787 -
Stsc120832g00028 661 SMART PHD_3 579 625 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120832g00028 Stsc-Chr120832 215903 218682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120832g00028 5 630 PHD Transcription Factor Family AT5G22260 32.857 5.29e-121 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc120832g00028 PHD 7.6e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120832g00028 K26271 - gmx:100813850 988.023