Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120832g00019 ATGGTTTTGTCTTGGACAAGGGGGAGGGTGTTCCGGCGCGCTCGGAAAGGGAAGGACCTCCAAGTCAATGACTTGGAGGTTGAGATTTCAGTTCCTTCCCATTTTCGGTGCCCGATCACCCTCGACCTAATGAAGGATCCGGTAACGGTATCCACGGGTATTACCTACGACAGGGACAGTGTCGAGAAGTGGATCGAGGAAGGGAACAACACGTGTCCGGTAACGAAAAAGGTGTTGACAACCTTTGACATGATCCCTAACCATGCTCTTCGGAGGATGATCCAAGATTGGTGCGTGGAGCACCGTTCTTTCGGAATCGAGAGGATCCCTACTCCGAGGATCCCCGTTACACCGTACGAGGTTTCCGACACGTGTGCAAAGATCGTGAATGCGGCGAAACAGGGTGATGAAAACAAGTGCAGGGAGCTGGTGAGGAAGATCAAGGGTTGGGAGAAGGAGAGTGATAGGAACAAGAGGTGCATAGTTGCAAATGGTGCTTCTCTTGCTCTGGTCAACGCCTTTGACTTTTTCTCATCATTGGGTTTTGAAGAGAATAATAATGTTAGTAGCTTGTTGGAGGAGATCTTGGGTGTGTTGGCATGGATGAGGCCTATGAGTGAGGAGGGTAAGTCCATGTTGGGTTCAAAGAGTTCCATGAGTTGCATGGTTTGGTTCTTGTCGAAGGGTAATATAGACCTTTCCATAAAGCAAAGTGTTGCCTTGTTGCTCAAGGAGGTTCCAATTGAAGTGTTGGCAAATACCCAAGGTGTTGCTGAAGGGTTGGTGAAGATGATTAAGGAGCCCATTGGGAGTGCCTCAATTACAAAGGCATGTTTATCAATGATTTTTAAATTGGTAACATATTCCAAGGGCAAGGATGTAATTTCACAAAGATTTGTGGAATTGGGTTTGGTTGAAGTTTTGTTGGATACAATTGTAGATTGTGAGAAAGGGGTTTGTGAGAAGGCCTTAGGGGTATTGGATTCAATTTGTGGGACAAAACAAGGGAAGGAGATTGCCAAGAATAATGCTCTTACAATTCCACTTGTGGTGAAGAAACTTCTGAGGGTTTCTGAATTGAGTTCTTGCTTTGCGGTTTCAATTATTTGGAAGATTTGTGATAAGGAGGCCCAAGAAGAAGAAGGAGAAGAAGGGGTTTTCGTTGAGGCACTTCAAGTTGGGGTGTTCCAGAAGCTTCTTGTTTTGTTGCAAGTTGGGTGTGGTGAGAGAACAAAGGAGAAGGCCACAGAGTTGTTGAAGTTGTTGAATGGTTATAGAAGCAAGGTAGATTGTGTTGATACATCTTTGGAACTTCAGCACCTTAAGAAGCCATTCTAA 1338 0.4529 MVLSWTRGRVFRRARKGKDLQVNDLEVEISVPSHFRCPITLDLMKDPVTVSTGITYDRDSVEKWIEEGNNTCPVTKKVLTTFDMIPNHALRRMIQDWCVEHRSFGIERIPTPRIPVTPYEVSDTCAKIVNAAKQGDENKCRELVRKIKGWEKESDRNKRCIVANGASLALVNAFDFFSSLGFEENNNVSSLLEEILGVLAWMRPMSEEGKSMLGSKSSMSCMVWFLSKGNIDLSIKQSVALLLKEVPIEVLANTQGVAEGLVKMIKEPIGSASITKACLSMIFKLVTYSKGKDVISQRFVELGLVEVLLDTIVDCEKGVCEKALGVLDSICGTKQGKEIAKNNALTIPLVVKKLLRVSELSSCFAVSIIWKICDKEAQEEEGEEGVFVEALQVGVFQKLLVLLQVGCGERTKEKATELLKLLNGYRSKVDCVDTSLELQHLKKPF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120832g00019 445 CDD RING-Ubox_PUB 32 84 IPR045210 -
Stsc120832g00019 445 Coils Coil 133 153 - -
Stsc120832g00019 445 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Stsc120832g00019 445 PANTHER WDSAM1 PROTEIN 28 427 IPR045185 GO:0061630
Stsc120832g00019 445 Gene3D - 122 431 IPR011989 -
Stsc120832g00019 445 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Stsc120832g00019 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 106 IPR013083 -
Stsc120832g00019 445 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Stsc120832g00019 445 SUPERFAMILY RING/U-box 27 106 - -
Stsc120832g00019 445 SUPERFAMILY ARM repeat 152 422 IPR016024 -
Stsc120832g00019 445 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120832g00019 Stsc-Chr120832 179873 181488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120832g00019 26 445 U-box Gene Family AT5G37490 44.884 1.72e-118 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120832g00019 - - gmx:100795913 601.668