Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120832g00015 ATGAAAAGAAACATTGATCTTGAAGCTGAAGCCTCAGCCGAACATGAATGCGAAGTCAGCAGCCAGGTTGCATCCAGTGTCTCTATTCAAGAAGCCTCTCGAATCACGGTTAATCCGAATTCGGATGCTATTTCACTTGACTTAACTCTCAACTTCAAGAACAATGATGAGTTAGTAGCAACAAGAGATTCAATAGGATTCTCATTCTCAAGCACTACTAGTGAGAGCAGCAATGACCCTGCCTCTCAGACAACAGAATCCAGCGAGGGGTCTCGAATCTTCGCTTGCAATTACTGCCAGCGCAAGTTTTTCAGCTCTCAAGCTCTTGGTGGACACCAGAATGCTCACAAGAGGGAAAGGACAATGGCAAAAAGGGCCATGAGGATGGGATTTTTCTCTGATAATTATGCAAGTCTAGCTTCTCTGCCTCTGCATGGTTCTTTCAGGTCTTTAGGAATAAAGGCTCATTCTTCTTCCACAATGCACCATGTGAGATTGAGGCCTACTCCTGAGATGAAAAGCAATGCAAGATTTGAGCAAGGACATGTTGGCCTTCCAATGTTCTTGGAGGATGCTGACTCGGAACTCGTGTGGCCGGGTAGTTTTCGCCAGGTCGGAGATGCTGGCGAAAATAGTATTCATCAGGAGTTCATACTGGGTGGAAATCCAAGTTTGAGTTTCACTAAGGTGAGTCCACCAGAAGAAGACATTGAGAATTCAACACCAGATTTGACATTGAAACTGTGA 747 0.4485 MKRNIDLEAEASAEHECEVSSQVASSVSIQEASRITVNPNSDAISLDLTLNFKNNDELVATRDSIGFSFSSTTSESSNDPASQTTESSEGSRIFACNYCQRKFFSSQALGGHQNAHKRERTMAKRAMRMGFFSDNYASLASLPLHGSFRSLGIKAHSSSTMHHVRLRPTPEMKSNARFEQGHVGLPMFLEDADSELVWPGSFRQVGDAGENSIHQEFILGGNPSLSFTKVSPPEEDIENSTPDLTLKL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120832g00015 248 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Stsc120832g00015 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 172 IPR044246 GO:0009788
Stsc120832g00015 248 FunFam Zinc finger protein 2 70 140 - -
Stsc120832g00015 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Stsc120832g00015 248 MobiDBLite consensus disorder prediction 69 88 - -
Stsc120832g00015 248 SUPERFAMILY beta-beta-alpha zinc fingers 90 122 IPR036236 -
Stsc120832g00015 248 Gene3D Classic Zinc Finger 70 137 - -
Stsc120832g00015 248 MobiDBLite consensus disorder prediction 229 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120832g00015 Stsc-Chr120832 167440 169491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120832g00015 75 248 C2H2 Transcription Factor Family AT1G66140 49.000 3.65e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc120832g00015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120832g00015 - - gmx:100794851 310.457