Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120832g00011 ATGCCATTAGAAGGGATTTTCATGGAAGCAAGAAGTTCATCAACAACAACAACTCCTCCTCTTCCTGATCTTTCCCTTCAAATAAGCCCTCCAAGTAGTAGCTCTTCATCTTCTTTATTGATTTGCAAGGGTAGTAGTAGCAGTAGTACCAACAATAACAATAACAATAACAATAACATCTTCCCTGAGCTCTCTCTTGGAACCATTAATTCCAATAGAGGAGCTATTACCACTACTACTACAACCAATATTCCTCATCACATGAACTATGGAGGGGTTTCCGTTTCACTTCTTCATCATGACTCCCACGCCGCGGCGGGGTTGAGGAGGCCGCCAATCAAGGGTATTCCGGTATATCACAACCGTTCGTTCCCTTTCATGCCATCATCAATGGAACACCATTCTAGAGAAAGCAACAAGATTAATAACAATATGTGCTCCTATCAACACCATCACCACATCATGATCCCTTCTTCACCTTCACAACAACAACAACAAACTATTAATAATAACTACCTTATTGGAGCCGCCGTACCTTCTTCTTCTTCTTCTTTGCCGGGTTTGGATCCAATCGCAAGGCTCAATGCCTTCAAATCTCATCATCATCATCATCATCCGTTATACCCTCATCATCATCAACATCATGAAGTAGCATCTCCACAGCATCATCATCATCACGGTGGGTTTATGATGAGATCCAACAGATTCTTGCCGAAGCTACCTACAAAGAGGAGCATGAGAGCGCCCAGAATGAGGTGGACGAGCACCCTCCATGCCCGATTTGTTCATGCTGTTGAGCTTCTTGGCGGCCATGAAAGAGCAACTCCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCCCATGTCAAAAGCCATTTGCAGATGTATAGAACTGTTAAGACCACTGACAAGCCTGCAGCTTCTTCAGATGGATCCGGGGATGATGACATGTCGCCAGTGGGCGGCAGCAGTGACTATAGCGGTAGCCTCCGACAATTTTCGGACCAAAGAGGGCGGCCGGATCGATCATTATTGCAACAAGATATGGACTACTCCTCCACCACCACCACTCTATGGAGTAATTCTTCAAGTTGTAGAGAGACATGTCAACAAACATCATCTGATATAAATGGTCTAAGACAACATATCTTACACTCTCAAACAAAATCAGGAGGGCATAATAATCATATCCAGGAATGTGATTCAACGCAAGTGAAGAACAATTTGCAAGGTTCTAATACTTTGGAATGCAAGAACCCATGCTTGGAGTTCACATTAGGCAGACCTGATTGGAATGGCAAAGAACAAGCCTAA 1326 0.4374 MPLEGIFMEARSSSTTTTPPLPDLSLQISPPSSSSSSSLLICKGSSSSSTNNNNNNNNNIFPELSLGTINSNRGAITTTTTTNIPHHMNYGGVSVSLLHHDSHAAAGLRRPPIKGIPVYHNRSFPFMPSSMEHHSRESNKINNNMCSYQHHHHIMIPSSPSQQQQQTINNNYLIGAAVPSSSSSLPGLDPIARLNAFKSHHHHHHPLYPHHHQHHEVASPQHHHHHGGFMMRSNRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSDGSGDDDMSPVGGSSDYSGSLRQFSDQRGRPDRSLLQQDMDYSSTTTTLWSNSSSCRETCQQTSSDINGLRQHILHSQTKSGGHNNHIQECDSTQVKNNLQGSNTLECKNPCLEFTLGRPDWNGKEQA 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120832g00011 441 SUPERFAMILY Homeodomain-like 246 302 IPR009057 -
Stsc120832g00011 441 MobiDBLite consensus disorder prediction 9 57 - -
Stsc120832g00011 441 NCBIfam myb-like DNA-binding domain, SHAQKYF class 249 302 IPR006447 GO:0003677
Stsc120832g00011 441 Gene3D - 248 305 - -
Stsc120832g00011 441 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 22 439 IPR044847 GO:0000976|GO:0006355|GO:0010158
Stsc120832g00011 441 MobiDBLite consensus disorder prediction 1 57 - -
Stsc120832g00011 441 FunFam Myb family transcription factor 247 305 - -
Stsc120832g00011 441 MobiDBLite consensus disorder prediction 304 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120832g00011 Stsc-Chr120832 121442 128602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120832g00011 238 329 G2-like Transcription Factor Family AT4G17695 69.565 2.09e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc120832g00011 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120832g00011 - - gmx:100813413 346.665