Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120831g00079 ATGGGGTTGAGAATTGACATGTTTGTTACTGAAAGATTGGAGCTTTGGTTGTTTAAGAGAAGGAAGGGACTAGGGATTTTATTGCAGATTGCATTTGCTTGGTGGGTTTTTCTACTGTTTCTTCACCCTGTTTCTGCTCTGAGACCCTTGAGGGAGAGAACTCGTTCTTGGGGTGATGAGTGGCTTTTTACAAGAAAAGACGAGAGTGATATTGGTCCATTTTCACAATGGAACATTACAGGAACTTACAGAGGGACTTGGAAGTTTCTTGACACGGTAAATGGCTCTTCTAGATTTCCAGATATCAGAAAAACAAGTGGTAGCTCTGTAATTGAATTAATTAGTACCCCCACAAAGATAACCGGAGTACATTATATACAGGGGGTTATTATATACCATGATGTTTTTGACAACGAATATGATGTCGGTGGTGCTCAAATCAAAGTAGAAGGTGTATATATATGGCCTTTTCGACAGCTTCGATTGGTAGCCAACAGTGGAAAAGAGGGAGACTCAAGTCAGGATGATGACTATATTTTATCCAATCCATATCATCTGCTAGGGGTTTTCTCTTCTCAGGTGCTTCAAGATTCTTCACGAGATAAGATATGGAGAAGAAAGCATTCTCCAATGTATGACATGGAGAAACACTGTAATATTGAAATTTCTGCACAGGTTTCACGCTTGCCATCCTCAAAAAGTGAAGGCGAGCGTGATCGTTTTCACTTAGAAGGGTTAATGGAGAGTCCCTCTTTGGATGACGACGGGGACTGCTTCTCAGCTTTACTGTTAAATGCAACTTCTGTTAACATTGAAGTCTATTACAACAAGGCAGTGAACTATACCTTGATGGTTACTTTTATCTCTTTTTTGCAAGTTCTTCTATTGATTCGACAAATGGAGCATAGCAGCACTCAGTCTGGTGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAGGCGATAATGGACGCATATCTCTGCCTTTTACACCTTACTGCAGGAATACTAGTTGAGTCGTTGTTTAATGCTTTTGCAACTGCCGCATTTTTCAAGTTTGTTGTGTTTTCAATATTTGAGATGAGATATCTCCTCGCCATCTGGAAGGCTAGTAGACCTTTGAGTAATGGGGAAGGCTGGGAGACAATGAGGCGTGAACTTTCAGTGTTATACAGTCGTTTCTATGGAATCCTGTTGGGAGGCATTCTTTTGATGTACGAGTTCCATCATTATTTAAGACCAATTCTTCTTCTTATATACTCTTTTTGGATACCTCAAATAATCACCAATGTTATTCGCGATTCACGCAAGCCATTGCATCCTCACTATATCTTAGGGATAACCATTACTCGGTTAGCAATTCCCTTATATGTTTTTGGTTGCCCTAACAATTTCATGCGCATAGAATCAGATAAGAGCTGGTGTGTTTGTTTGGCTGCATTTATTGGGCTTCAAGCCACAGTTCTTCTTCTTCAGCATTATCTTGGGTCTCGATGGTTCATTCCTCGTCAGATACTGCCTGAGAAATATAGCTACTATAGGAGGTTTGATCAAGATACAAGACATGCTTTGGACTGTGTGATTTGCATGACCTCCATTGATCTTACTCAACGGTCTAATGACTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCTCTCTTCCACCGGCATAG 1731 0.4084 MGLRIDMFVTERLELWLFKRRKGLGILLQIAFAWWVFLLFLHPVSALRPLRERTRSWGDEWLFTRKDESDIGPFSQWNITGTYRGTWKFLDTVNGSSRFPDIRKTSGSSVIELISTPTKITGVHYIQGVIIYHDVFDNEYDVGGAQIKVEGVYIWPFRQLRLVANSGKEGDSSQDDDYILSNPYHLLGVFSSQVLQDSSRDKIWRRKHSPMYDMEKHCNIEISAQVSRLPSSKSEGERDRFHLEGLMESPSLDDDGDCFSALLLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHHYLRPILLLIYSFWIPQIITNVIRDSRKPLHPHYILGITITRLAIPLYVFGCPNNFMRIESDKSWCVCLAAFIGLQATVLLLQHYLGSRWFIPRQILPEKYSYYRRFDQDTRHALDCVICMTSIDLTQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120831g00079 576 PANTHER RING ZINC FINGER PROTEIN 150 575 - -
Stsc120831g00079 576 Pfam Ring finger domain 525 570 IPR001841 -
Stsc120831g00079 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 576 IPR013083 -
Stsc120831g00079 576 SMART ring_2 526 569 IPR001841 -
Stsc120831g00079 576 CDD RING-H2_TUL1-like 520 575 - -
Stsc120831g00079 576 SUPERFAMILY RING/U-box 507 574 - -
Stsc120831g00079 576 SMART ringv_2 525 570 IPR011016 GO:0008270
Stsc120831g00079 576 ProSiteProfiles Zinc finger RING-type profile. 526 570 IPR001841 -
Stsc120831g00079 576 FunFam E3 ubiquitin-protein ligase, putative 512 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120831g00079 Stsc-Chr120831 475654 482299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120831g00079 526 573 C3H Transcription Factor Family AT4G12190 39.583 7.29e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120831g00079 K23788 - gmx:100780140 1028.85