Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120831g00070 ATGGTCACTACACATTCAATGGTCCATGGTCCAGTTGTCATATTCATCAGGAGACGTAAACCTTCTTCTTCTTCTTCAATGAAAGTGGAAAGAAAGATAGTAGAGAGAAACAGGAGAGAGCTGTTCAAGAGCCTTCATTTCAAGCTCAACTCTCTTCTCCCTAACCATAACCCTAGGGACGTATTACCACGTGCTGAAAAAGTTGAAGATGCCATAAGGTACATCAAAAGCTTAGAGGAAAGGGTTAAGATAGCCAACGAGAAGAAAGAAAGCCTATTACGAATTGTAAGGAACAAGAGTGGACCTCATGAGACGCATGGATTAAGCCTAACAAAAACTCCAGCTATTGAAATACATGAATTGGGTTCCATGTTAGAGATAGTTCTTATGACTTCTGGCATTGATAACCAATTCATCTTTAAGGAAATCATTCGCATATTACATGAAGAGAACATTGAAGTCCTTAGTGCAAATTCTTCACTTGCTGGAGATGCAATGCTTCATGTTGTGCACGCAAAGACTGGGCAATTCTTTCAATTCGGAACATCAAAAGTAAGTGAGAGATTGAAAATTTTCGTGAACGGCCATTTTCAGGATCTTGAAGGGGAGCATAACTTCCGGTTGCCAACTTTTAATTTTCCTCCTAGCGTCTTTTAA 657 0.3957 MVTTHSMVHGPVVIFIRRRKPSSSSSMKVERKIVERNRRELFKSLHFKLNSLLPNHNPRDVLPRAEKVEDAIRYIKSLEERVKIANEKKESLLRIVRNKSGPHETHGLSLTKTPAIEIHELGSMLEIVLMTSGIDNQFIFKEIIRILHEENIEVLSANSSLAGDAMLHVVHAKTGQFFQFGTSKVSERLKIFVNGHFQDLEGEHNFRLPTFNFPPSVF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120831g00070 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 93 IPR036638 GO:0046983
Stsc120831g00070 218 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 24 192 - -
Stsc120831g00070 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 26 78 IPR011598 GO:0046983
Stsc120831g00070 218 Coils Coil 68 95 - -
Stsc120831g00070 218 Pfam Helix-loop-helix DNA-binding domain 29 79 IPR011598 GO:0046983
Stsc120831g00070 218 SMART finulus 32 84 IPR011598 GO:0046983
Stsc120831g00070 218 Gene3D - 18 103 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120831g00070 Stsc-Chr120831 415031 417794 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120831g00070 22 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.066 9.69e-24 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120831g00070 HLH 6.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120831g00070 - - gmx:100817883 195.282