Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120831g00069 ATGGCACACCAGCAGAGAGGTCAAGCTTCTTCTTCAACCAAAGTGGAAAGGAAGATCATAGAGAGAAACAGAAGAGAACAGATGAAGAACCTTTGTTTCAAGCTCAGTTCTCTTCTCCCTAACTTCAACCCTAAGGAAACGTTGCCACGTGTTGAGCGAATAGAGGAGGCCGTCATCTACATCAAAACCCTAGAGTCAAGGGTTAAGATTGCTAAGGAGAAGAAAGAAAGCTTATTAAACAAGGGAATGAAGAAGAGATGCCATGGTTTGGGTAGTTCCAGTGCCTTTGATGATGAGATTCAAGGAATAACCCTAAAACCCCCAACTATTGAGATTCATGAACTTGGATCCATGCTAGAGATAGTTCTTATGACTTCTGCCTTTGATAACCAATTCATCTTTAAGGAAATTATTTGCATATTGCTTGAAGAGAATATTGAGGTCCTTAGTGCAAATTCTTCACTCAATGGAGATTCAATGATTCATGTTGTGCACGCAGAGAATCATTATCTCTTTCAATTAGGAGCAACGAAAGTATTAAGTGAGAGATTGAAGATGTTTGTGGACGGGCATTTGCAGGACATTCTAGGAGCACAGCAGGAGCCATAA 609 0.4056 MAHQQRGQASSSTKVERKIIERNRREQMKNLCFKLSSLLPNFNPKETLPRVERIEEAVIYIKTLESRVKIAKEKKESLLNKGMKKRCHGLGSSSAFDDEIQGITLKPPTIEIHELGSMLEIVLMTSAFDNQFIFKEIICILLEENIEVLSANSSLNGDSMIHVVHAENHYLFQLGATKVLSERLKMFVDGHLQDILGAQQEP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120831g00069 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
Stsc120831g00069 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 81 IPR036638 GO:0046983
Stsc120831g00069 202 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 186 - -
Stsc120831g00069 202 Coils Coil 61 81 - -
Stsc120831g00069 202 Gene3D - 4 91 IPR036638 GO:0046983
Stsc120831g00069 202 Pfam Helix-loop-helix DNA-binding domain 14 65 IPR011598 GO:0046983
Stsc120831g00069 202 SMART finulus 18 70 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120831g00069 Stsc-Chr120831 400197 402129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120831g00069 2 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.458 3.29e-23 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120831g00069 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120831g00069 - - gmx:100817883 185.652