LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120831g00066	ATGTCTTTACTTTACCTCCTTGTTATGATTCTTCACACTGTAACCACTTTGAGCTCAGCTTCTGCCACTGAATTTGTCTACAACACAAACTTCAGCAACAAAAATATCACCTTATTTGGAAATGCCACTATTCAGTCCTCCATTCTGACTCTCACAAACAAGACTTTCTTCACCATAGGCCGTGCATTTTACCCTTACAGAATACCAACCAAACGAGCCAACTCTTCCACCATTCTCCCCTTTGCAACCTCCTTTATATTCTCTCTAGCCTCCTTCAAAAACTTTGTTGCTGGACCTGGCTTTGCTTTCTTGTTCACACCATCAAGAGGTCTAAATGGCACGACCTCAAGTCAGTATCTTGGTCTCTTCAATTTCAGTAATGAAGGCAACCAGCAGAACCATGTTCTTGGAGTTGAGTTTGACACTATTAAAAATGGAGAAATTTTTGGAGACATGAATGACAACCATGTTGGTGTTGATATAAACTCGCTTGTTTCCTCGGTTGCACATGAAGCAGGCTATTGGTGTGGGAAAGATGATAAGGAATTCAAGGTGTTGAAGATAAATAGTGGGGAGAATTATCAAGTATGGATTGAGTTCAACCAATCAAAGTTTAACATTACTATGGCTAAGGCAGGGGAAATTCGGCCTCGAGTGCCTCTAATCAGTTGGAATGTTAATCTTTCTCGGGTTCTTGTGGATGAAATGTATGTTGGTTTCACTGCTTCAACAGGGATGGCAATAGATTCTACTAAAATACTTGCTTGGAGTTTTAGCAATTCTAATTTTTCAATTGGTGATGCTTTAGTTACTGATAATTTGCCTTCATTTGTCTTTCATAAAAGGTGGTTTTCTGGATCAACAGCTATAATTGTTGGAGTCTTCATTGTTGTAATTATTAGTGCTGGGTTTGTGTTGTTGGTTATCTGTAGAAAAAACAAGGCAGATGAAGAACTTGAAGAATGGGAATTGGAGTACTGGCCCCATAGGATTGGTTTCCATGAGATTGATGCAGCAACAAGGGGGTTCTCTGAACAGAACGTTGTTGGTAATGGAGCGAACGGGAAGGTATATAAAGGGGTGTTGCAAGGTGAAGAAGTTGCAGTGAAGAGAATCCCTCAAGAAAGAGAAGAAGGGATGAAAGAGTTCTTGGCTGAGCTCTCAAGTCTAGGCAGAATGAGGCATAAAAATTTAGTGGGGTTGAAAGGTTGGTGCAAGAAAGAGAAGGGAAACTTGATTCTTGTTTACGACTTTATGAACAACGGAAGTTTAGACAAAAGAATCTTTGAGTGTGAAGAGAGAATGATGTTAGGATGGCAGGAGAGGATTGAGGTTTTGAAAAATGTAGCTTCAGGGATTCTTTATCTGCATGAGGGTTGGGAAGTTAAGGTTTTGCATAGGGACATCAAAGCAAACAATGTTCTATTGGACAAGGACATGAATGCTAGGTTGGGAGATTTCGGATTGGCGCGAATGCATGATCATCACGGACAAGTCGCCACCACAACTAAAGTATTAGGCACAATAGGATACATAGCTCCTGAAGTAATTAGATCAGGAAGAGCATCAACACAATCTGATGTGTATGGCTTTGGAATATTGATGTTGGAAGTGCTTTGTGGAAGAAGGCCAGTTGAAGAACACAAGCCAGGGCTACTTGAATGGTTGGTGTCCCTAAAGGCGAATGGCCAGCTGCATAGTGCTGTTGATCAGAGGTTGAAGGCTAAGGGTGGATACACCATTGAAGAAGCTGAGAGGTTGCTTCATTTGGGTTTGTTATGCTCAAATTCAGACCCTAATGTGAGGCCAATGATGAGGCAGATTGTGAAAATACTAGAAGGTGAAATGGAAGGAGTTGATTCTGATGAAGAAAATATGCAGATGAGTTTACTTGGAAAAATAAACTCAGCATCAATGTGGTCTAACAATGAGTGCACTTTCCCATACCCTACTTTGGAAGATATTAGGTTATTCAGATCAAGTTCTATGATGATTTCTGGAAGTGGCTCAGGTACCATTCCACCAGAGCTGTCAGAATCAGACAGCATTAGAGAAGGTAGGTAA	2064	0.4075	MSLLYLLVMILHTVTTLSSASATEFVYNTNFSNKNITLFGNATIQSSILTLTNKTFFTIGRAFYPYRIPTKRANSSTILPFATSFIFSLASFKNFVAGPGFAFLFTPSRGLNGTTSSQYLGLFNFSNEGNQQNHVLGVEFDTIKNGEIFGDMNDNHVGVDINSLVSSVAHEAGYWCGKDDKEFKVLKINSGENYQVWIEFNQSKFNITMAKAGEIRPRVPLISWNVNLSRVLVDEMYVGFTASTGMAIDSTKILAWSFSNSNFSIGDALVTDNLPSFVFHKRWFSGSTAIIVGVFIVVIISAGFVLLVICRKNKADEELEEWELEYWPHRIGFHEIDAATRGFSEQNVVGNGANGKVYKGVLQGEEVAVKRIPQEREEGMKEFLAELSSLGRMRHKNLVGLKGWCKKEKGNLILVYDFMNNGSLDKRIFECEERMMLGWQERIEVLKNVASGILYLHEGWEVKVLHRDIKANNVLLDKDMNARLGDFGLARMHDHHGQVATTTKVLGTIGYIAPEVIRSGRASTQSDVYGFGILMLEVLCGRRPVEEHKPGLLEWLVSLKANGQLHSAVDQRLKAKGGYTIEEAERLLHLGLLCSNSDPNVRPMMRQIVKILEGEMEGVDSDEENMQMSLLGKINSASMWSNNECTFPYPTLEDIRLFRSSSMMISGSGSGTIPPELSESDSIREGR	687

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120831g00066	687	SUPERFAMILY	Protein kinase-like (PK-like)	321	612	IPR011009	-
	Stsc120831g00066	687	Gene3D	Transferase(Phosphotransferase) domain 1	419	635	-	-
	Stsc120831g00066	687	SMART	serkin_6	343	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120831g00066	687	CDD	STKc_IRAK	349	614	-	-
	Stsc120831g00066	687	Gene3D	Phosphorylase Kinase; domain 1	307	418	-	-
	Stsc120831g00066	687	Pfam	Legume lectin domain	23	262	IPR001220	GO:0030246
	Stsc120831g00066	687	SUPERFAMILY	Concanavalin A-like lectins/glucanases	21	263	IPR013320	-
	Stsc120831g00066	687	ProSiteProfiles	Protein kinase domain profile.	343	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120831g00066	687	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	305	418	-	-
	Stsc120831g00066	687	ProSitePatterns	Legume lectins beta-chain signature.	136	142	IPR019825	-
	Stsc120831g00066	687	PANTHER	-	40	616	-	-
	Stsc120831g00066	687	FunFam	L-type lectin-domain containing receptor kinase S.4	21	266	-	-
	Stsc120831g00066	687	Pfam	Protein kinase domain	344	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120831g00066	687	FunFam	L-type lectin-domain containing receptor kinase S.4	419	625	-	-
	Stsc120831g00066	687	ProSitePatterns	Protein kinases ATP-binding region signature.	349	370	IPR017441	GO:0005524
	Stsc120831g00066	687	MobiDBLite	consensus disorder prediction	666	687	-	-
	Stsc120831g00066	687	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	464	476	IPR008271	GO:0004672\|GO:0006468
	Stsc120831g00066	687	CDD	lectin_legume_LecRK_Arcelin_ConA	23	261	IPR001220	GO:0030246
	Stsc120831g00066	687	Gene3D	-	21	270	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120831g00066	Stsc-Chr120831	375808	377871	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120831g00066	21	559	Receptor kinase-like Gene Family	AT4G04960	55.993	0.0	594

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Stsc120831g00066		Pkinase	1.8e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120831g00066	-		-	adu:107462120	1098.96