LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120831g00065	ATGGGTTGCATCACCTCCAAGAGTTCTGCAGCTGTTGATGACAGCAGGGAAGGTATGAAAAGGAAATTGGCATCAACCTCATCAAGCAAAAGGTTATCATCAAATATGATTGTTCCAAGGTTGATTTCTTCTAAAAGAGTTGAGGATAATAGTAAGGTTTTGGATGGTGTTATTGGGTTCAAGAATAATAAAATAGAGAAGCATGAATTGAGTGGTGTGCTTGATCATCATCATCATGGAATTGGAAGAATTCCAAAGGCTTCACAGGGCGAGCAAGTTGCAGCAGGGTGGCCCACATGGCTTTCTTCTGTTGCTGGTGAAGCTATCAGAGGCTGGATACCTAGGAGTGCTAACACTTTTGAGAAGTTCCATAAAATTGGTCAAGGAACTTATAGTACTGTTTATAAAGCACGCGACATAACTCACCAAAAGATAGTTGCCTTGAAGAGAGTTCGTTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTCATTCTGCGAAAGCTTGACCATCCGAACGTGATAAAGTTGGAGGGTTTGATAACAGCGCCAACATCTCGCAGCTTGTATCTTGTTTTTGAATATATGGAACATGATCTTACTGGACTTGCAGCAAATCCAGCCATTAAGTTTTCTGAACCACAGGTTAAATGCTACATGAAGCAGCTTCTTAGTGGATTGGATCATTGTCATAGCCATGGTGTCCTCCACCGTGACATAAAGGGTTCAAATCTTCTCATTGACAATAACGGCATCTTAAAGATTGCAGATTTTGGCTTGGCAAATTTTTTAGACCCCCATCATAGTGTTCCGTTGACCAGCCGTGTTGTAACTCTGTGGTATAGACCACCAGAACTTTTACTCGGAGCATCTCATTATGGAGTTGCAGTGGATTTGTGGAGCACTGGTTGCATTCTCGGAGAACTATATTCCGGCAGGCCCATATTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAAGATTTTTAAACTTTGCGGATCACCATCTGAGGACTACTGGCGCAAATTGCGGTTGCCACATTCAACTGTATTCAGGCCGCCGCACCATTATAGGCGATGTATTACAGACACATTTAAGGAATGTCCATCTGCTGCCGTGAGGCTTATAGAGACCCTACTTTCTGTCGATCCTGCACACCGAGGAACAGCAGCTGCTGCTCTAAAGAGTGATTTCTTTTCATTGGAACCCCTTGCTTGTGATCCATCAAGTTTACCAAAATATCCTCCTAGCAAAGAGATTGACTCTAAAATCTTGGATGAGACAACAAGAAGGCGAGGAGCTGTTGCGGGAAAGCAGCAAAAATCTGGATCAAGAGTCAGACAGGATAAAGATCATCCTTTTGTCTCATCAAAAGACAATGTTGACTCCCACATGACAGTGCAGCAAGGGCAACATCGTTCAAGCTCAAGCCAGAGTGGATTGTTAAACTCTAATGGCGAACCGGTGTCTGGATATTTTGTGTTTCCACGCAACAAGTCAAATGACACTAAAGAAACGAAAAATGACTTCTCCGGGCCTCTTTATCAGAGGCCTTCGCATTCAGGTCCATTAGTTCCGGTCTTTGCCTGGGAAAAGACTAGAAACGAAGTTGGTGACCGGCTTTCTGGATCAAACAAAGCCAATCTTTCAAAAATGTCTGGTTTAGTGGCATATAGGACTGCGTTGTCTCATGATCAAGAACAGAAACCAGATGGATGCGAGTCCACAGGAAACAAAATCTATCTCTCTGGTCCCTTGGTTTCATCAAACAATGTAGATCAGATCCTCAAAGAGCATGATAGAAAGATCCAAGAATATTCAAGGAGATTAAGAAATGATAGGTCTAAAGGTGACAAGAATCATGCAAAGTGA	1887	0.4261	MGCITSKSSAAVDDSREGMKRKLASTSSSKRLSSNMIVPRLISSKRVEDNSKVLDGVIGFKNNKIEKHELSGVLDHHHHGIGRIPKASQGEQVAAGWPTWLSSVAGEAIRGWIPRSANTFEKFHKIGQGTYSTVYKARDITHQKIVALKRVRFDNLDPESVKFMAREILILRKLDHPNVIKLEGLITAPTSRSLYLVFEYMEHDLTGLAANPAIKFSEPQVKCYMKQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLANFLDPHHSVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILGELYSGRPILPGKTEVEQLHKIFKLCGSPSEDYWRKLRLPHSTVFRPPHHYRRCITDTFKECPSAAVRLIETLLSVDPAHRGTAAAALKSDFFSLEPLACDPSSLPKYPPSKEIDSKILDETTRRRGAVAGKQQKSGSRVRQDKDHPFVSSKDNVDSHMTVQQGQHRSSSSQSGLLNSNGEPVSGYFVFPRNKSNDTKETKNDFSGPLYQRPSHSGPLVPVFAWEKTRNEVGDRLSGSNKANLSKMSGLVAYRTALSHDQEQKPDGCESTGNKIYLSGPLVSSNNVDQILKEHDRKIQEYSRRLRNDRSKGDKNHAK	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120831g00065	628	Gene3D	Phosphorylase Kinase; domain 1	107	202	-	-
	Stsc120831g00065	628	SMART	serkin_6	120	404	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120831g00065	628	SUPERFAMILY	Protein kinase-like (PK-like)	113	405	IPR011009	-
	Stsc120831g00065	628	MobiDBLite	consensus disorder prediction	448	463	-	-
	Stsc120831g00065	628	FunFam	probable serine/threonine-protein kinase At1g54610	203	444	-	-
	Stsc120831g00065	628	PANTHER	CELL DIVISION PROTEIN KINASE	118	409	-	-
	Stsc120831g00065	628	FunFam	probable serine/threonine-protein kinase At1g54610	107	202	-	-
	Stsc120831g00065	628	ProSiteProfiles	Protein kinase domain profile.	120	404	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120831g00065	628	MobiDBLite	consensus disorder prediction	1	31	-	-
	Stsc120831g00065	628	CDD	STKc_CDK9_like	120	404	-	-
	Stsc120831g00065	628	Pfam	Protein kinase domain	120	404	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120831g00065	628	Coils	Coil	601	621	-	-
	Stsc120831g00065	628	MobiDBLite	consensus disorder prediction	424	439	-	-
	Stsc120831g00065	628	MobiDBLite	consensus disorder prediction	464	491	-	-
	Stsc120831g00065	628	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	240	252	IPR008271	GO:0004672\|GO:0006468
	Stsc120831g00065	628	Gene3D	Transferase(Phosphotransferase) domain 1	203	442	-	-
	Stsc120831g00065	628	ProSitePatterns	Protein kinases ATP-binding region signature.	126	149	IPR017441	GO:0005524
	Stsc120831g00065	628	MobiDBLite	consensus disorder prediction	415	523	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120831g00065	Stsc-Chr120831	371680	375259	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120831g00065	112	445	Core Cell Cycle Gene Families	AT5G10270	49.429	4.68e-111	341

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Stsc120831g00065		Pkinase	1.7e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120831g00065	-		K08819	gmx:100775462	840.491