Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120831g00062 ATGGAGCCACTGCTGAGAGGCGAAGGGAGTGGTGGCCGGAGGGAGCTCGCGCGGGGGATATTCCGCCGTTCTGACGCGATCACTTATGGCTCCAACTATGAGAAAGCTGCTGCACTCGTCGATCTGGCTGAAGATGGTGTTGGTCTCCCTGAGCAAATTCTTGATTCTTCAAGCTTTCAGAGTTCTTCAAGATATTATTTTATTTTCACTAAATTCAATATCTTGTGGTCTCTTGCTTATTTTGCTTTGATAGTCCTAAATTTTTTGGAGAAACCTCTGTGGTGTGAAAATTATACCAAACCGTCTTGCAGCGATAGAGAGTATTTCTTTCTGGGACAGTTGCCATATCTAACTGATGCAGAATGTCTTCTTTATGAGGGATTAGCTATTGTGGTGCTAATCATACATACTTTCTTCCCAATATCATATGAAGGGCCTCGTATATATTGGAGAAATCAAATTAATCTGTTGAAGGTCTTCTGTCTATTAGTTGTCATTGCTGATATGCTGGTTTATGCTATTTATTTGTCTCCAGCGGCTTTTGATTCTCTACCTTTCAGAGTTGCTCCTTATTTCAGGGTTATTCTTTTCGCTCTGAATATTAGGGAGCTACGTGAAACCATCACTATCTTGAGTGGCATGGTTGGCACATACTTGAATGTCTTGGCTCTGGGGCTTCTGTTTCTTCTTTTTGCAAGTTGGGTGGCTTATGTGATGTTTGAAGATACAATACAAGGGAAAACAGTATTCACTTCTTATGGTGCTACATTGTATCAGATATTTGTTTTATTTACCACATCGAATAATCCAGATGTCTGGGTGCCTGCATACAAGGCTTCACGTTGGTATTGCCTGTATTTCGTTATCTATGTGCTTTTGGGCGTTTACTTCGTTACAAACTTGGTCCTTGCCGTTGTTTATGATAGTTTCAAGAGTGAGCTTGTGAAACAAGTTTTCAAGATGGATCGTATGAGAACAGCAATGTTGGAGAAAGCTTTTAATCTCTTAGATACGCATAGTACTGGATATCTTAACAAAGAACAATGCATTAGGCTCTTTGAGGAGTTGAACAAGTACAGGACTTTACCAAAGATCACCAAGGAAGAATTTGAGTTAATATTTGAGGAGCTCGATGATAGTGGTGATGTAAAGCTCAACAAGGATGAATTTGCTGATATTTGCCATGCCATTGCTTTAAAATTCCAGAAGGAGGATACCCCCTCCTACTTTGAGTATTTGCCATTCTACAATTCACCCGCCTCAAACAAATTGAAAGAATTTGTGAAGAGATCCATGTTTGGATACCTAATCTCTTTTTTTCTTGTGCTCAATCTAGTTGCTGTTATTATTGAGACAACGCTTGATATACAAAATAATTCCGCTCAAAAGGTGTGGCAAGTGGTTGAGTTCATTTTCGGGTGGATATATGTAATAGAAATGGCTCTGAAGGTTTATTCATATGGATTTGAGAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTGTTATCACTTGGATAATTGTCATTGGAGAAACTATAACTTTTGCTTCACCTGATGATCAGACTTTCTTCTCAAATGGTGAATGGATTCGTTACCTTCTTCTGGCAAGAATGTTGAGGTTGATAAGGCTCCTAATGCATGTCAAGCAATTCCGAGGCTTTGTTGCAACTTTCTTAACACTGTTGCCAAGTTTGATGCCATACTTCGGGATCATATTTTGTGTCTTGTGTATTTATTGCTCGGTTGGTGTACAGATTTTTGGTGGACTTGTTAACGCTGGAAACCCTAAATTGCTAGCATCAGATCTTGCTGATAATGACTATTTGCTATTCAATTTCAATGATTATCCGAATGGAATGGTGACGCTTTTCAATTTGCTAGTCATGGGGAACTGGCAAGTATGGATGCAGAGCTACAAGGAGCTAACTGGTACTTCTTGGGCCTACGCATACTTCATAAGCTTTTATTTAATCACGGTTCTGCTACTTTTGAACTTGGTTGTTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGATCTTGAGTCATCAGGCACCTCGGATGAACAGGACAAGGAAGTTGAAGGAGATAAATATCGAAGGCGATCAGTTGGCACAAAATCTCGAAGCCAAAGAGTTGATGCTCTTCTTCATCATATGTTGAGTTCTGAGTTGTGTCAAAGTCAAACACAGCCTTCCAATTCATAG 2211 0.3976 MEPLLRGEGSGGRRELARGIFRRSDAITYGSNYEKAAALVDLAEDGVGLPEQILDSSSFQSSSRYYFIFTKFNILWSLAYFALIVLNFLEKPLWCENYTKPSCSDREYFFLGQLPYLTDAECLLYEGLAIVVLIIHTFFPISYEGPRIYWRNQINLLKVFCLLVVIADMLVYAIYLSPAAFDSLPFRVAPYFRVILFALNIRELRETITILSGMVGTYLNVLALGLLFLLFASWVAYVMFEDTIQGKTVFTSYGATLYQIFVLFTTSNNPDVWVPAYKASRWYCLYFVIYVLLGVYFVTNLVLAVVYDSFKSELVKQVFKMDRMRTAMLEKAFNLLDTHSTGYLNKEQCIRLFEELNKYRTLPKITKEEFELIFEELDDSGDVKLNKDEFADICHAIALKFQKEDTPSYFEYLPFYNSPASNKLKEFVKRSMFGYLISFFLVLNLVAVIIETTLDIQNNSAQKVWQVVEFIFGWIYVIEMALKVYSYGFENYWRDGQNRFDFVITWIIVIGETITFASPDDQTFFSNGEWIRYLLLARMLRLIRLLMHVKQFRGFVATFLTLLPSLMPYFGIIFCVLCIYCSVGVQIFGGLVNAGNPKLLASDLADNDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTSWAYAYFISFYLITVLLLLNLVVAFVLEAFFAEMDLESSGTSDEQDKEVEGDKYRRRSVGTKSRSQRVDALLHHMLSSELCQSQTQPSNS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120831g00062 736 MobiDBLite consensus disorder prediction 687 712 - -
Stsc120831g00062 736 Gene3D - 311 394 - -
Stsc120831g00062 736 FunFam Two pore calcium channel protein 1 556 713 - -
Stsc120831g00062 736 Pfam Ion transport protein 129 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc120831g00062 736 Pfam Ion transport protein 431 676 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc120831g00062 736 SMART efh_1 328 356 IPR002048 GO:0005509
Stsc120831g00062 736 SMART efh_1 369 397 IPR002048 GO:0005509
Stsc120831g00062 736 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Stsc120831g00062 736 Pfam EF-hand domain pair 329 393 IPR002048 GO:0005509
Stsc120831g00062 736 Gene3D - 422 555 IPR027359 -
Stsc120831g00062 736 ProSiteProfiles EF-hand calcium-binding domain profile. 324 359 IPR002048 GO:0005509
Stsc120831g00062 736 SUPERFAMILY Voltage-gated potassium channels 432 676 - -
Stsc120831g00062 736 SUPERFAMILY EF-hand 310 397 IPR011992 -
Stsc120831g00062 736 FunFam Two pore calcium channel protein 1 203 314 - -
Stsc120831g00062 736 Gene3D - 203 310 - -
Stsc120831g00062 736 Gene3D - 556 716 - -
Stsc120831g00062 736 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 3 731 IPR044581 GO:0005245
Stsc120831g00062 736 FunFam Two pore calcium channel protein 1 423 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120831g00062 Stsc-Chr120831 351405 362894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120831g00062 1 736 Ion Channels AT4G03560 67.164 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120831g00062 K16900 - gmx:100806160 1137.87