Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120831g00057 ATGGATTTACATCAGTATTTTGATGAGGGCATGCCCCAAATCGACTATTTTGAAGATAATTCGTCGCTGGAAATGTGGAAATGTGCTAGTGATGCCATTGCAGATTCTGATAGAAATGCCTCTAGTGGCTTTGACTGTAACATCTGCCTGGAAGGCGTGCAAGATCCGGTAGTAACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAGTGGCTTAATTTCCGAAACATCTCTTCCGAAATAGGAGAGAAGCTGAAGCCACAATGTCCAGTATGCAAGTCAGAAATTTCTCAGTCCTCCCTTGTTCCCTTGTACGGCCGCGGCCAAGATAGTTCGGCCTCAGAAAACAAGGCTAACCAAGTACCACGGCGACCCCTTGGTCCAATATCATCGAGTACCACATCGGTTTCCCAACCTACGTCTCGAGTTTATCATTCCCGTTATCCGGATCCTTCTCCACAATTCAACACGACAGGCAGTTCACTAACAAACTCCTTCAACACGACATATGGAATAATTGGCGAAACAATATATGCAAGGGTATTCGGAAACCAGGTGACCAACATATACACATACCCCAATTCATACCATCTTTCTGGGAACAATAATCCAAGGATCAGAAGGTATCTCATGGAAGCTGATAGATCACTGAGCAGAATATGTTTTTTCCTCTTTTGTTGCACAGTTTTGTGTCTTCTCTTATTCTGA 714 0.4398 MDLHQYFDEGMPQIDYFEDNSSLEMWKCASDAIADSDRNASSGFDCNICLEGVQDPVVTLCGHLYCWPCIYKWLNFRNISSEIGEKLKPQCPVCKSEISQSSLVPLYGRGQDSSASENKANQVPRRPLGPISSSTTSVSQPTSRVYHSRYPDPSPQFNTTGSSLTNSFNTTYGIIGETIYARVFGNQVTNIYTYPNSYHLSGNNNPRIRRYLMEADRSLSRICFFLFCCTVLCLLLF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120831g00057 237 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Stsc120831g00057 237 MobiDBLite consensus disorder prediction 109 161 - -
Stsc120831g00057 237 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Stsc120831g00057 237 SUPERFAMILY RING/U-box 42 107 - -
Stsc120831g00057 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 234 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc120831g00057 237 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Stsc120831g00057 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 127 IPR013083 -
Stsc120831g00057 237 SMART ring_2 46 94 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120831g00057 Stsc-Chr120831 306229 308437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120831g00057 39 237 C3H Transcription Factor Family AT4G28270 39.614 1.54e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120831g00057 K10666 - gmx:100785491 316.235