Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120831g00052 ATGCAGCTCCACCAGCATGTCGCCGCCGTGCCAGTTTTGATATTTTGCTTCGGAGTGATGTTAGTTTGCGGGCAGAAACGATCACAGCACCGCATCCTCGATACACATTGGCATGCTGGCACCGCCACGTGGTACGGCGATCCCGAAGGAGACGGTAGCACTGGAGGGGCGTGTGGATATGGGACGATGGTGGATGTGAAGCCGTTGAAGGCGAGGGTGGGTGCGGTGGGGCCGGTTCTGTACAAGAACGGGGAAGGCTGCGGAGAATGCTACAAGGTGAAGTGCTTGGATCCAACCATATGCTCCAAGCGAGCGGTGACGGTTATAATCACGGACGAGTGCCCTGGTTGTCCCTCTGACCGAACCCACTTTGACCTCAGCGGTGCCGCATTTGGTCGAATGGCGGTTTCAGGCGAGAATGGTCAGCTCAGGAACCGAGGTGAAATCCCAGTCATATACCAAAGAACAACTTGCACATATCCAGGCAAAAACATTGCCTTCCGTGTGAATGAAGGTTCCACACCCTTTTGGTTATCACTCTTGGCAGAGTGGGAGGATGGAGATGGAGACATCAGCTCCATGCATATACAAGAAGTAGGGTCAAGTGAATGGCTGGAAATGAAACAACTGTGGGGTGCAAATTGGTGCATTATTGGGGGTCCTTTAAGAGGACCTTTCTCTGTGAAACTAAGCACATCGTCAGGGAGAAGTCTCACTGCTAGGGATGTTATTCCAAGCAACTGGACACCAAAAGCCACTTACACCTCTCGCTTGAATTTCATTCCTTAG 789 0.5209 MQLHQHVAAVPVLIFCFGVMLVCGQKRSQHRILDTHWHAGTATWYGDPEGDGSTGGACGYGTMVDVKPLKARVGAVGPVLYKNGEGCGECYKVKCLDPTICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAVSGENGQLRNRGEIPVIYQRTTCTYPGKNIAFRVNEGSTPFWLSLLAEWEDGDGDISSMHIQEVGSSEWLEMKQLWGANWCIIGGPLRGPFSVKLSTSSGRSLTARDVIPSNWTPKATYTSRLNFIP 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120831g00052 262 SUPERFAMILY PHL pollen allergen 163 256 IPR036749 -
Stsc120831g00052 262 CDD DPBB_EXPB_N 37 158 - -
Stsc120831g00052 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Stsc120831g00052 262 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Stsc120831g00052 262 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Stsc120831g00052 262 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Stsc120831g00052 262 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Stsc120831g00052 262 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Stsc120831g00052 262 Pfam Expansin C-terminal domain 165 245 IPR007117 -
Stsc120831g00052 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Stsc120831g00052 262 Pfam Lytic transglycolase 78 152 IPR009009 -
Stsc120831g00052 262 PRINTS Major pollen allergen Lol pI signature 183 198 IPR005795 GO:0005576|GO:0019953
Stsc120831g00052 262 PRINTS Major pollen allergen Lol pI signature 135 150 IPR005795 GO:0005576|GO:0019953
Stsc120831g00052 262 PRINTS Major pollen allergen Lol pI signature 75 86 IPR005795 GO:0005576|GO:0019953
Stsc120831g00052 262 PRINTS Major pollen allergen Lol pI signature 232 249 IPR005795 GO:0005576|GO:0019953
Stsc120831g00052 262 PRINTS Major pollen allergen Lol pI signature 113 128 IPR005795 GO:0005576|GO:0019953
Stsc120831g00052 262 PRINTS Major pollen allergen Lol pI signature 167 182 IPR005795 GO:0005576|GO:0019953
Stsc120831g00052 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 163 IPR007112 -
Stsc120831g00052 262 Gene3D - 159 257 IPR036749 -
Stsc120831g00052 262 SUPERFAMILY Barwin-like endoglucanases 33 162 IPR036908 -
Stsc120831g00052 262 SMART dpbb_1 73 153 IPR007112 -
Stsc120831g00052 262 PANTHER EXPANSIN-B3 15 260 - -
Stsc120831g00052 262 FunFam Expansin B3 23 159 - -
Stsc120831g00052 262 Gene3D - 22 158 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120831g00052 Stsc-Chr120831 287760 290353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120831g00052 11 198 Expansin Gene Family AT4G28250 64.767 1.20e-88 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120831g00052 K20628 - gmx:100780112 442.195