Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120831g00049 ATGGATGAATCTACTAATAAGCACAACAACAGTGGCACCAAGTTCAGGAACATGGGTGTGGATGATGACACTGGTGCACACAAGGTTTTCGATGAAATGAATGATCCAACCTTTTTTCAGAGCCATCATCAATGGAAGCCAGTTTTTGATGAAGCTTCCCTCTTACATAACAGGCCTCTCAAGAAGATTCGAAGCCCTCAACGTTCTTCTTCTTCTTCTTCTTCTTCACTTCAACAACCTCTTCCTTCTCCTTCTTCCTCCTCTGTTCCTCCATCTTCATCATCATCAAGAATAGTGTTTCCTTTTGCATTTGATCCCTCACAACAAAACCCGATGCAAATGCAAATGCAGTTCCCTTTCATGCACCCACCCATTCAACCAACAACAACACAGAACCAAATGATATCTTTCGCTTCTCAATCTCATCAACCTCAACATCAACACAACATGAACATGAACACAGTGTATCAACCTCAAATGCTACAACAACAACAACAACAGAATCAGCAGCAAATTCTTCAGTATTGGAGCGAAGCACTGAACCTTAGTCCAAGAGGGAGAATGATGATGATGAACAACAGGTTAAGGCCACCACCCCCACAGCCCTTGAACACGACCAAGCTCTATAGGGGTGTGAGGCAACGTCATTGGGGGAAATGGGTAGCTGAGATTCGTCTACCTCGAAACAGGACTCGGCTCTGGCTTGGCACCTTTGACACTGCAGAAGATGCTGCCATGGCCTATGATCGTGAGGCTTTCAAGCTTAGAGGTGAGAATGCACGCCTCAATTTCCCTGAACTCTTCCTCAACAAAAAGGAAGAAGAAGAAGCACCTTCTGATGCTCCTACTACTTCATCTCCTTCCTCTTCCATTACAACAACAAAGCAAGTTGAAGAGGTTTCTGAAGGTGGGAATGCCAATGTGGAGAAGAGTCCAATAGAAGAGGGTAATGAGAATGAGAATGAAGGAGGTGGTGGTGGTGGTGAAGGGGTTTCTCAAGAGCTGGTGTGGGGAGAGATGTCTGCATGGTTTAATGCTATTCCTTCAGGTTGGGGTCCAGGTAGTCCTGTTTGGGATGATTTGGACACTTCCAACAATAATTTTCTTTTGCAATCTCACATTCCTCCTTTTGCTCTCAACAACTCAAATCAGAACCAACAACAACAAGATGGATTCAATGACAATGATGCTGCTGATGATGTTCATATACAACAGGATTGA 1221 0.4414 MDESTNKHNNSGTKFRNMGVDDDTGAHKVFDEMNDPTFFQSHHQWKPVFDEASLLHNRPLKKIRSPQRSSSSSSSSLQQPLPSPSSSSVPPSSSSSRIVFPFAFDPSQQNPMQMQMQFPFMHPPIQPTTTQNQMISFASQSHQPQHQHNMNMNTVYQPQMLQQQQQQNQQQILQYWSEALNLSPRGRMMMMNNRLRPPPPQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKKEEEEAPSDAPTTSSPSSSITTTKQVEEVSEGGNANVEKSPIEEGNENENEGGGGGGEGVSQELVWGEMSAWFNAIPSGWGPGSPVWDDLDTSNNNFLLQSHIPPFALNNSNQNQQQQDGFNDNDAADDVHIQQD 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120831g00049 406 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 22 361 - -
Stsc120831g00049 406 CDD AP2 207 267 IPR001471 GO:0003700|GO:0006355
Stsc120831g00049 406 Pfam AP2 domain 209 257 IPR001471 GO:0003700|GO:0006355
Stsc120831g00049 406 Gene3D AP2/ERF domain 208 266 IPR036955 GO:0003700|GO:0006355
Stsc120831g00049 406 MobiDBLite consensus disorder prediction 57 95 - -
Stsc120831g00049 406 MobiDBLite consensus disorder prediction 280 301 - -
Stsc120831g00049 406 FunFam Ethylene-responsive transcription factor 2 207 266 - -
Stsc120831g00049 406 MobiDBLite consensus disorder prediction 376 394 - -
Stsc120831g00049 406 SMART rav1_2 208 271 IPR001471 GO:0003700|GO:0006355
Stsc120831g00049 406 MobiDBLite consensus disorder prediction 273 332 - -
Stsc120831g00049 406 SUPERFAMILY DNA-binding domain 208 266 IPR016177 GO:0003677
Stsc120831g00049 406 MobiDBLite consensus disorder prediction 64 95 - -
Stsc120831g00049 406 MobiDBLite consensus disorder prediction 376 406 - -
Stsc120831g00049 406 ProSiteProfiles AP2/ERF domain profile. 208 265 IPR001471 GO:0003700|GO:0006355
Stsc120831g00049 406 PRINTS Ethylene responsive element binding protein signature 231 247 IPR001471 GO:0003700|GO:0006355
Stsc120831g00049 406 PRINTS Ethylene responsive element binding protein signature 209 220 IPR001471 GO:0003700|GO:0006355
Stsc120831g00049 406 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120831g00049 Stsc-Chr120831 275934 277751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120831g00049 98 360 AP2-EREBP Transcription Factor Family AT2G20880 50.370 6.63e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc120831g00049 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120831g00049 - - gmx:100101898 307.76