Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120831g00040 ATGATTGTATGGGAAGATTTCATGGCAGAAGATGTGACCTTCTGTGGTGTGTTTGATGGCCATGGTCCTCATGGTCACCTTGTTGCACGCAAAGTTAGGGACTCCCTGCCAATAAAACTGCTTTCTTTTTTGCATTCCGATGAATCGAGGCGGAACGGATCAGGGAAAGCTTTCTTAAAAGGGAATATAAAGCCTGACACTGAAGATCCTGAGAAAGATTGCTCTGATGAGGATAAGCTAAATTTAATGTGGAGAGAAGCTTTCATGAAGGCATATAAGGCCATGGACAAAGAGCTGAGGTCTCATCCGAATCTGGATTGTTTCTGTAGCGGGAGCACGGCTGTAACAATAGTGAAGCAGGGATCAAATCTGTTCATGGGAAACATTGGGGATTCCCGAGCCATCATGGGATCTAAGGACAGCAATGACTCCATGGTGGCAACTCAGTTGACAGTTGATTTGAAGCCTGATTTGCCAAGGGAAGCGGAAAGAATCAAAAGGTGCAAGGGCAGGGTGTTTGCCTTGCAAGATGAACCAGAAGTTCCAAGGGTGTGGTTACCTTTTGATGATGCACCTGGATTAGCAATGGCTAGAGCATTTGGCGATTTTTGTTTGAAGGAATACGGCGTTATTTCTATACCAGAATTTTCTCATCGGCTTCTTACCGACAAAGACGAGTTCATTGTTCTTGCCTCAGATGGGGTCTGGGATGTGTTAAGCAATGAAGAGGTGGTTGAGATAGTATCCACAGCACCAACTCGAGCATCAGCAGCAAGGATTCTGGTGGATTCTGCAGCCCGAGAGTGGAAACTCAAGTATCCGACGTCAAAGATGGATGATTGTGCTGTTGTATGCCTTTTTTTGGATGGTAAAATGGACACGGAATCCGATTGTGATGAGCAGTGCTATTCTTCTGCAACAATCCAAAGCAACCATTCAGGTAATCCAGTTGAGTCGGATGATGGTCAAAAGGCCGAGCCTTCTCTGCAAAGGAACTTCACTGTACGATCCTCAGAAGAAAATCAAACCTATGGAGGAATATCTGTTGATGTTGAGGATGGAGCTTCAGTAGCAGCAGCAACTGAAGATCAAAATTGGTTGGGTTTGGAAGGTGTCACCCGAGTGAACTCATTGGTCCAACTTCCTAGATTTTCTGAGGAAAAGCAAAAGCAAGCCTCTTAG 1182 0.4509 MIVWEDFMAEDVTFCGVFDGHGPHGHLVARKVRDSLPIKLLSFLHSDESRRNGSGKAFLKGNIKPDTEDPEKDCSDEDKLNLMWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGNIGDSRAIMGSKDSNDSMVATQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDKDEFIVLASDGVWDVLSNEEVVEIVSTAPTRASAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDTESDCDEQCYSSATIQSNHSGNPVESDDGQKAEPSLQRNFTVRSSEENQTYGGISVDVEDGASVAAATEDQNWLGLEGVTRVNSLVQLPRFSEEKQKQAS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120831g00040 393 MobiDBLite consensus disorder prediction 49 75 - -
Stsc120831g00040 393 FunFam probable protein phosphatase 2C 52 1 291 - -
Stsc120831g00040 393 CDD PP2Cc 1 288 IPR001932 -
Stsc120831g00040 393 Gene3D - 1 296 IPR036457 -
Stsc120831g00040 393 MobiDBLite consensus disorder prediction 307 328 - -
Stsc120831g00040 393 ProSiteProfiles PPM-type phosphatase domain profile. 1 288 IPR001932 -
Stsc120831g00040 393 PANTHER PROTEIN PHOSPHATASE 5 286 IPR015655 GO:0004722|GO:0006470
Stsc120831g00040 393 SMART PP2C_4 5 286 IPR001932 -
Stsc120831g00040 393 SUPERFAMILY PP2C-like 7 290 IPR036457 -
Stsc120831g00040 393 Pfam Protein phosphatase 2C 13 258 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120831g00040 Stsc-Chr120831 199196 201839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120831g00040 1 390 PP2C-type Phosphatase Gene Family AT1G03590 72.335 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120831g00040 - - adu:107477895 692.189