Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120831g00020 ATGAGGTTTGCTTCCTTCTTCACAAGTGCTTTCCAACGCCATCCTTCCTACTCCAAGCTTATTCTCTTATGCACTCTCAGTGGTGGAGGCTTGCTGTCATACTCAGAATCACAATCTATTACTGGCACTCCTGCTTCTAGTACTAATTCTGATGTGCCGGCGAAAAAGAAAGTGGTTGTTCTTGGAACAGGATGGGGTGGTACCAGTTTCCTGAAGGATCTTGATGCATCCTTGTATGATGTTCAGGTTGTTTCACCTTGTAACTACTTTGCATTCACACCTCTATTACCCAGTGTCACTTGTGGGACTGTCGAAGCGCGAAGCATTGTAGAGCCAGTTCGAAACATGGTCAAAAAGAGAAAAGGAGAAATTAAATTCTGGGAGGCGGAATGTCTGAAGATTGATCATGCTAACAAAACGGTATTTTGTCGGTCCAATATTGATAGCAACTTAGTGGGAAGTGGTGAGTTTTCTTTGGAATATGACTACTTGGTTGTAGCCATAGGAGCACAAGTGAATACTTTTAACACCCCTGGTGTCAAGGAACATTGTTATTTTCTAAAGGAGGTAGAGGATGCACAGAAAATCAGAAGGGCTGTGATAGATTGTTTTGAGAAGGCTGTTCTTCCATCTCTAACCGACGAAGAACGAAGGACAAATCTGCATTTTGTTGTTGTTGGAGGGGGTCCAACTGGTGTGGAATTCGCTGCTGAGCTTCATGACCATTTCCAAGAAGATTTAGTCAATTTATACTCATCCGTCAAAGATTTTGTGAAGATAACAGTGATTCAATCAGGAGATCACATCTTGAACACGTTTGATGAAAGAATTAGTCTATTTGCTGAAGATAAGTTTGGAAGAGATGGTATAGAAGTTCAAACTGGATGTAGAGTTGTCAGTGTCGATGACAAAAACATTACAATGAAGACAAAATCAACTGGAGAAATTAGCTCTGTACCCCATGGAATGGTTATCTGGTCCACCGGGATCGCAACTCGTCCAGTTGTGAGGGACTTTATGGAACAAATTGGTCAGGGTAAAAGGCGTGTGCTAGCAACAAATGAATGGTTGCGAGTGAAGGGTTGTGATTCTGTGTATGCTATTGGTGATTGTTCTTCGATAGATCAACGAAAAATAATGGATGATATCTCAGCCATTTTCGAGGCTGCGGATAAAGACAAATCCGGTACCTTAACTGTTGCAGAACTCAAGGATGTGATAGATGACATAGTTGTAAGATATCCACAATTCGATCTGTATTTAAAGAGTAAACATATTCTGGATTTGAGTACTCTATGGAAAGATTCAGAAGGAAATTATAGAGAAGAAATAGACATAGAAGGCTTTAAGATGGCCCTTTCTCATATGGATTCACAGATGAAAACTCTACCAGCAACTGCACAGGTTGCTTCCCAACAAGGTGAATATCTAGCTAGATGCTTTAACCGCATGCATCAATGTGAAGAGCATCCGGAAGGTCCTCGACGATTTAAAGGATCCGGACGCCATACATTTCTTCCCTTCCGGTATAAACACTTTGGCCAATTCGCTCCTCTGGGAGGGGAGCAAGCTGCTGCAGAACTTCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTAAGCTGGCGGACAAGGATGCTAGTGGTATCAGATTGGACAAGAAGATTCATATTTGGAAGAGATTCTAGCCGTATTTAA 1734 0.4193 MRFASFFTSAFQRHPSYSKLILLCTLSGGGLLSYSESQSITGTPASSTNSDVPAKKKVVVLGTGWGGTSFLKDLDASLYDVQVVSPCNYFAFTPLLPSVTCGTVEARSIVEPVRNMVKKRKGEIKFWEAECLKIDHANKTVFCRSNIDSNLVGSGEFSLEYDYLVVAIGAQVNTFNTPGVKEHCYFLKEVEDAQKIRRAVIDCFEKAVLPSLTDEERRTNLHFVVVGGGPTGVEFAAELHDHFQEDLVNLYSSVKDFVKITVIQSGDHILNTFDERISLFAEDKFGRDGIEVQTGCRVVSVDDKNITMKTKSTGEISSVPHGMVIWSTGIATRPVVRDFMEQIGQGKRRVLATNEWLRVKGCDSVYAIGDCSSIDQRKIMDDISAIFEAADKDKSGTLTVAELKDVIDDIVVRYPQFDLYLKSKHILDLSTLWKDSEGNYREEIDIEGFKMALSHMDSQMKTLPATAQVASQQGEYLARCFNRMHQCEEHPEGPRRFKGSGRHTFLPFRYKHFGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRMLVVSDWTRRFIFGRDSSRI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120831g00020 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 161 179 - -
Stsc120831g00020 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 58 77 - -
Stsc120831g00020 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 222 240 - -
Stsc120831g00020 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 56 381 IPR023753 GO:0016491
Stsc120831g00020 577 Gene3D - 434 576 - -
Stsc120831g00020 577 Gene3D - 46 409 - -
Stsc120831g00020 577 SUPERFAMILY FAD/NAD(P)-binding domain 220 375 IPR036188 -
Stsc120831g00020 577 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Stsc120831g00020 577 SUPERFAMILY FAD/NAD(P)-binding domain 55 274 IPR036188 -
Stsc120831g00020 577 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Stsc120831g00020 577 PANTHER NADH DEHYDROGENASE 48 577 IPR045024 GO:0003954|GO:0006116
Stsc120831g00020 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 46 407 - -
Stsc120831g00020 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 424 576 - -
Stsc120831g00020 577 SUPERFAMILY EF-hand 336 464 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120831g00020 Stsc-Chr120831 104499 107842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120831g00020 3 577 Chloroplast and Mitochondria Gene Families AT4G21490 62.779 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120831g00020 K03885 - zju:107416753 935.25