Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120831g00012 ATGGCTTCTCAAACCACCATCAACAACCATGACCAAGTGAAGATCATAGAACAATGTAAAGTTTCACCGCCACAAGGCTCTCTTCCCTCCACCACCATCCTCCCCGTCACTTACTTTGATATCCAATGGTTCCTGTCCCCTCCAATTAACCGCATCTTCTTCTATGAGTTCCCATACTCCACCAACCACTTCCTTCAATCATCACTCCCTCCTCTCAAACACTCCCTCTCCCTCTCCCTCCAACACTTCTTTCCATTCGCCTCCAACCTCATCGCCCCTCCCACCCCGAATCTCCCCTTCATCCGTTTCATAGACGGTGTTGACTCACTCTCTCTCACCATTGCAGAGTCTCAAGCAGAGTTTTCCCTGCTTGTATCTGATTCTCCACAAGATATTAGGCTCTTACACCCTTTGGTCCCTTCTTTGCCTCCTAAGCTTACCTTGGAGGATGGCACACATGTTATGCCTCTCATGGCCATTCAACTCACCGTTCTACCAAACTCTGGCTTCGCCATCTGCCTAACATTCTGCCATGTCGCTGCAGATGGCAACTCGCTTCATCAGTTCACCAAGTTTTGGGCCAATCTTTGCAAGCAAATAGTAACAAGAGGTGGTGGTGGTGGAGAATCTAGCTTTTTATCTCTTCCCTTTCTTGATAGAGACATAGTTAAGGACCCAAAAGGGCTTAAACATGTTTACATGGAAGAGATAAGAGATTTCATGAGGAAGAAGAAAAACGACATGGATTCTCATGACAACATCATGGTACGTGCAACTCTTGTCCTAAACCATAGCCAAATTGAGAAACTCAAGAAATTTGTGTCTCTTAAATACCGTGACACCTATGGTTCTAATAATAATAATACATTATTACACATGTCAACCTTTGTGGTCACGTGTTCTTTAATTTGGGTTTGTATGATGCAATCAGAACAGCAAACACAAGATGATGATGATGATGATATTCATGATAAGGATTTTGATGAAGTTTGCTATTTCATAATTCTAGCTGATTACCGTGGGCGTTCTGAATTCTCAATACCTTCAAATTACTTTGGAAATTGCTTAGTGTCTGGATATGTGGGAATCAAGAGGGGTGACCTAGTTGGAGATTATGGGATTTTTGAGGCAGCACGTGGAATTGAAAGGGAGATTAGAAATTTGAGAAATGATGCATTAAGAAAGGCTGAAAGTTTTATCTCAGATTCTAGAGCAGTAAGAGAATGCTATAGAAGAATTGTGGTGGCAGGGTCTCCAAAATTAGGAGTTTATGAAACTGATTTTGGGTGGGGAAAGCCTAAGAAATCTACAGCAGCTCATGTTGAATCAGGACAAGCATTTTCTCTTTCGGATTGTAGGAACAATGAAGGTGCAGTTGAGGTTGGAATTGCACTTGAAAGGATCCGAATGAATCAATTCATCAGCATTTTCCAGCAACACCTCCAAAATATTGATCATGATTTGTAA 1467 0.4213 MASQTTINNHDQVKIIEQCKVSPPQGSLPSTTILPVTYFDIQWFLSPPINRIFFYEFPYSTNHFLQSSLPPLKHSLSLSLQHFFPFASNLIAPPTPNLPFIRFIDGVDSLSLTIAESQAEFSLLVSDSPQDIRLLHPLVPSLPPKLTLEDGTHVMPLMAIQLTVLPNSGFAICLTFCHVAADGNSLHQFTKFWANLCKQIVTRGGGGGESSFLSLPFLDRDIVKDPKGLKHVYMEEIRDFMRKKKNDMDSHDNIMVRATLVLNHSQIEKLKKFVSLKYRDTYGSNNNNTLLHMSTFVVTCSLIWVCMMQSEQQTQDDDDDDIHDKDFDEVCYFIILADYRGRSEFSIPSNYFGNCLVSGYVGIKRGDLVGDYGIFEAARGIEREIRNLRNDALRKAESFISDSRAVRECYRRIVVAGSPKLGVYETDFGWGKPKKSTAAHVESGQAFSLSDCRNNEGAVEVGIALERIRMNQFISIFQQHLQNIDHDL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120831g00012 488 Gene3D - 252 484 IPR023213 -
Stsc120831g00012 488 PANTHER - 13 483 - -
Stsc120831g00012 488 Gene3D - 12 250 IPR023213 -
Stsc120831g00012 488 Pfam Transferase family 31 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120831g00012 Stsc-Chr120831 46497 47963 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120831g00012 52 473 Monolignol Biosynthesis Gene Families AT5G48930 21.818 1.70e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120831g00012 - - adu:107462106 715.687