Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120831g00002 ATGGGAAGAGTACCTTGTTGTGACAAGAATAATGGACTCAAGAAAGGTCCATGGACACCAGAGGAAGATCTCAAGCTTGTCCACTACATCCAGAAACATGGACCTGGAAACTGGAGATCCCTCCCAAAGAATGCTGGTCTGCAAAGATGTGGCAAGAGTTGCCGCCTTAGATGGACAAATTACCTGAGACCTGACATCAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAAACCATCATCCAACTTCACAGCGTCATGGGAAACAAGTGGTCGGCTATAGCGGCGCGATTGCCGGGAAGAACAGACAATGAGATAAAGAACTATTGGAACACACACATAAGGAAAAGGCTGCTAAGAATGGGGATTGATCCGGTCACTCACGCGCCGCGCCTGGATCTACTGGACATGTCTTCTGTACTAAGATCAGCTTTAGGGAGTCCTTCATCAATTCTGAATCTGCAAGGCTTGTTGGTAAACCCTGAATTGCTAAAGCTTGTAGCCACTGCATCTCTATTATCTCAGACTCAGAATAATCTACCACAATTGATCAATGCTGCTGGGGATTTGAACTCGAATTCGAATTCGAATTCTCAGCAACAACTACAAACCAATTTCCAACAAGAGTCAATAAGGAATCATGATCAGTTTCGGATGCCAAATCAAAGCACCAATACAGTAGACTTGGTGGATAATAATAATTGTAACGCCATGAATAATAATTCATTTATTAGTACTACTCCTTCTTCATATGTTGGGGAGAATTTGAATGTGTCTCAGCAAAGGCAAGTTGATTTGCTAGAGAATGAATTGTTACAGTACATAAACAATGGTGTTGATCAGAACATTATGGGGTATGAATCGGTTATGTCAACGCCAACAACAACGCCTTTGACTTCATCATCAACTTATGTGAATAGCAGCAACACAGAACAGGAAGAGAGGGACACCTATTGCAGTGAAGTTTTCAAATTAGAGATTCCAGAGAGTCTTGATATTAATGACTTCTTGTAA 1011 0.4164 MGRVPCCDKNNGLKKGPWTPEEDLKLVHYIQKHGPGNWRSLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSVLRSALGSPSSILNLQGLLVNPELLKLVATASLLSQTQNNLPQLINAAGDLNSNSNSNSQQQLQTNFQQESIRNHDQFRMPNQSTNTVDLVDNNNCNAMNNNSFISTTPSSYVGENLNVSQQRQVDLLENELLQYINNGVDQNIMGYESVMSTPTTTPLTSSSTYVNSSNTEQEERDTYCSEVFKLEIPESLDINDFL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120831g00002 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Stsc120831g00002 336 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc120831g00002 336 Gene3D - 14 67 - -
Stsc120831g00002 336 MobiDBLite consensus disorder prediction 293 312 - -
Stsc120831g00002 336 FunFam Transcription factor MYB39 70 131 - -
Stsc120831g00002 336 Coils Coil 256 276 - -
Stsc120831g00002 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Stsc120831g00002 336 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Stsc120831g00002 336 SMART sant 14 64 IPR001005 -
Stsc120831g00002 336 SMART sant 67 115 IPR001005 -
Stsc120831g00002 336 FunFam MYB-related transcription factor 14 67 - -
Stsc120831g00002 336 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Stsc120831g00002 336 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Stsc120831g00002 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 253 - -
Stsc120831g00002 336 Gene3D - 70 117 - -
Stsc120831g00002 336 CDD SANT 70 113 IPR001005 -
Stsc120831g00002 336 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Stsc120831g00002 336 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120831g00002 Stsc-Chr120831 5624 6821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120831g00002 1 177 MYB Transcription Factor Family AT4G21440 75.393 6.38e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc120831g00002 Myb_DNA-binding 8.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120831g00002 K09422 - gmx:100812189 392.119