Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120830g00070 ATGTCGTTGCGGTTAGGACAGGTCCCAACCGTGGTTCTCTCAAACTCCGAAGCCGTAGAAGTGTTCCTCAAGACACACGACGCTGTTTTGGAGAGCCGCCCTAAAATGCAAGCCACGGAGTACGTAGTATACGGCTCCAAAGGGTTGGTGTTCTCGGAATACGGACCGTACTGGCGCAACATGAGGAGACTGTTTACGTCGCAGCTTCTGAGTGTGTCGAAGGTGTCGTCCTTTACGCATGTGAGAGAGAGGGGTGTGAAAGTGGCGGTTAAATCTATCAAGAGAGCCGCGGAAAGAGGTGAAGTGATGGACATTAGTGAATTGGTTTATCATGTTGCAGAGGAAGTTGTGTATAGGATAGTGCTGGGGCGTAGTAGGAATGATGAGTCTGATTTGGCAAGCCTACTTCATGAGGCTATTAGCCTCGCCGGAGCCTTTAATCTCTCAGATTACGTGCCTTGGCTTGGATCGTTTGATCTCCAGGGATACACAAGAAGGTTGAAGAGACTTGGTAAAGCCGTTGACGAAGCGTTGGAGAAGATCATTGCGGAGCATGAGCAGGGTGGTTCAGGTGCACAGCATGCCTTGAGGAACCACATGGATTTCATTGACATATTACTCTCTCTTGTGAACCAACCCATTGATCCAAATGATGAACACAGCCAAGTCATGGATCGAACCAACGTTAAGGCTATACTCCTAGATTCTATTGCAGGGTCATTTGAAACCTCTGCAACCGTTATTATATGGGTTTTGTCCGAGCTCTTAAAGCATCCAAGAGTGATGAGAAACCTTCAAGACGAGCTAACTAATGTGGTTGGATTGGACAAATTTGTTCAAGAGACCCATTTAGCAAACCTAACTTACTTGGATATCGTGATCAAAGAAACATTACGATTACATCCTCCCGGAGCAATAGTGACCCGTGCGTCAACAAAAGATGCTATGATTAATGGTTATCATATTAAAAAAAATACAATGATCCTAATTAACTTGTGGGCCATAGGAAGAGATCCGAAAGCATGGTCTGACAATGCTGAAGAGTATTACCCGGAGAGATTTATAGCCAACAATTGTGACTACCGTGGCTACAACTTTCATTTTATACCATTTGGTGCTGGTAGCAGAGGATGTCCCGGAATACACCTAGGACTAACTATAGTGAAACTTCTTGTGGCTCAGTTTGTACATTGCTTTAATTGGGAACTACCATCAAACATGACTCCGGATGAGTTGGACATGAACGAAAAATTTGGCCTCTCACAGCCAAGAGCCAAGAATCTGCTAGCTGTGCCAACTTATCGTCTTACTTGCGAAATTCAAAAGGACAAATCTTAA 1338 0.4477 MSLRLGQVPTVVLSNSEAVEVFLKTHDAVLESRPKMQATEYVVYGSKGLVFSEYGPYWRNMRRLFTSQLLSVSKVSSFTHVRERGVKVAVKSIKRAAERGEVMDISELVYHVAEEVVYRIVLGRSRNDESDLASLLHEAISLAGAFNLSDYVPWLGSFDLQGYTRRLKRLGKAVDEALEKIIAEHEQGGSGAQHALRNHMDFIDILLSLVNQPIDPNDEHSQVMDRTNVKAILLDSIAGSFETSATVIIWVLSELLKHPRVMRNLQDELTNVVGLDKFVQETHLANLTYLDIVIKETLRLHPPGAIVTRASTKDAMINGYHIKKNTMILINLWAIGRDPKAWSDNAEEYYPERFIANNCDYRGYNFHFIPFGAGSRGCPGIHLGLTIVKLLVAQFVHCFNWELPSNMTPDELDMNEKFGLSQPRAKNLLAVPTYRLTCEIQKDKS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120830g00070 445 PRINTS P450 superfamily signature 292 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120830g00070 445 PRINTS P450 superfamily signature 369 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120830g00070 445 PRINTS P450 superfamily signature 239 256 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120830g00070 445 Coils Coil 160 180 - -
Stsc120830g00070 445 PRINTS E-class P450 group I signature 228 245 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120830g00070 445 PRINTS E-class P450 group I signature 248 274 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120830g00070 445 PRINTS E-class P450 group I signature 368 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120830g00070 445 PRINTS E-class P450 group I signature 378 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120830g00070 445 PRINTS E-class P450 group I signature 2 21 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120830g00070 445 Pfam Cytochrome P450 2 426 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120830g00070 445 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 371 380 IPR017972 GO:0005506|GO:0016705
Stsc120830g00070 445 FunFam Uncharacterized protein 92 431 - -
Stsc120830g00070 445 PANTHER CYTOCHROME P450 93A3-LIKE 1 436 - -
Stsc120830g00070 445 SUPERFAMILY Cytochrome P450 2 435 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120830g00070 445 Gene3D Cytochrome P450 1 431 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120830g00070 445 CDD CYP71-like 1 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120830g00070 Stsc-Chr120830 570911 573813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120830g00070 1 440 Monolignol Biosynthesis Gene Families AT5G04330 38.000 1.60e-104 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120830g00070 - - adu:107478736 578.941