Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120830g00059 ATGTCTCGAACGTGCTCACAGTGTGGAAACAACGGCCACAACTCCCGCACATGCATCGATGCTTCACACTCCGCCGCGCCGGTTTCCGGCGCCGGATCTCCTCCCAGAGAGAACGCCATCATGCTGTTCGGCGTAAGACTCACCACCGCCGAAGGAAGCTCATCATCAACATCCTTCCGGAAAAGTGCTAGTATGGGTAATTTGTCCCAGTTTGATCAAATTCCACCGCAGGATCCAACCGTTGCTGACGCAGGCTATGTCTCCGACGACGTCGTTCACGCCTCAGGCCGCAGCCGCGAGCGCAAGCGTGGTGTTCCTTGGACTGAGGAGGAGCACAAATTGTTCTTGTTGGGTTTGCATAAGGTTGGAAAAGGTGACTGGAGAGGGATTTCTAGAAATTTCGTGAAGACTCGGACTCCTACTCAGGTTGCTAGTCACGCTCAGAAGTACTTCCTCCGCCGCCACAATCAGAACCGCCGCCGCCGGAGGTCTAGTCTTTTTGATATCACCACCGATACGGTGATGGAATCCTCTCCTATAATGGAAGAGCAAGTTCAGCAAGAAACGGCGGCCCCGCCCACGCCCCCGGCATATCCACCATCACACTACAGCGGCTTCCCGGGATCAGCTTTTCCAATGGGTTTATCTCCGGTGATGTTGCCGGTAGCTGCCGGTGGCGAGAGAGCAGCAAAACCAATCAGGCCAATGCCGATTTTGCCCGTTCCACCATCTTCTAAGATGGCAAATTTGAACCTGAAAGAGAGAACAACTCCTAGTACAGAATTTCGGCCTCCATCATTTGTTCTTAACTTAGCCCCGCCGCGTTTCGGCGATCAGTCCCCGGAGGAGAACAGTGGCCACTCCTCACCGTCGTCGCCGTCGTCCACGGCATCTTTTCAAGCAGGGAATTTCAATGGTGGCGGAGATAGCATAATTAGTGTTGCTTAA 948 0.539 MSRTCSQCGNNGHNSRTCIDASHSAAPVSGAGSPPRENAIMLFGVRLTTAEGSSSSTSFRKSASMGNLSQFDQIPPQDPTVADAGYVSDDVVHASGRSRERKRGVPWTEEEHKLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSPIMEEQVQQETAAPPTPPAYPPSHYSGFPGSAFPMGLSPVMLPVAAGGERAAKPIRPMPILPVPPSSKMANLNLKERTTPSTEFRPPSFVLNLAPPRFGDQSPEENSGHSSPSSPSSTASFQAGNFNGGGDSIISVA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120830g00059 315 PANTHER TRANSCRIPTION FACTOR KUA1 1 251 - -
Stsc120830g00059 315 Pfam Myb-like DNA-binding domain 106 151 IPR001005 -
Stsc120830g00059 315 ProSiteProfiles SANT domain profile. 102 155 IPR017884 -
Stsc120830g00059 315 MobiDBLite consensus disorder prediction 182 203 - -
Stsc120830g00059 315 SMART sant 103 153 IPR001005 -
Stsc120830g00059 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 102 153 IPR006447 GO:0003677
Stsc120830g00059 315 CDD SANT 106 151 IPR001005 -
Stsc120830g00059 315 MobiDBLite consensus disorder prediction 281 307 - -
Stsc120830g00059 315 ProSiteProfiles Myb-like domain profile. 99 151 IPR001005 -
Stsc120830g00059 315 MobiDBLite consensus disorder prediction 255 315 - -
Stsc120830g00059 315 Gene3D - 105 156 - -
Stsc120830g00059 315 ProSiteProfiles Zinc finger CCHC-type profile. 5 18 IPR001878 GO:0003676|GO:0008270
Stsc120830g00059 315 FunFam transcription factor MYB1R1 105 156 - -
Stsc120830g00059 315 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Stsc120830g00059 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 155 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120830g00059 Stsc-Chr120830 459726 462049 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc120830g00059 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120830g00059 - - var:108322503 365.54