Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120830g00049 ATGGCACTGCACGGTGGTGGTTCTTCGAAATGGAAGTACCATGTTTTCTTGAGTTTTAGAGGAGAAGATACCCGCTTAGGTTTCACTGATCACTTATACACAGCCTTGCAGAAGAGAAGCATCGATACTTTCAGAGACAATGAAGAGCTTCGAAAGGGTGAATTTATCTCTAAACAGCTCGTTCATGCAATTGAGGACTCTCTCTGCGCAGTTGTTGTGCTGTCCCCAAATTATGCCAACTCCGGGTGGTGTTTGGATGAACTCAAACAGATCGTTGAAACTAAAGGAAGTTCGGGGATGCTGGTGCCGGTGTTCTATGACGTGCATGCTTCCGATGTACGATACCAAAAAGGAAAGTTTGAAGAAGCTTTCAGAAAACATGAGGAAAGGTATAAAGAAAACAGAGACAAGGTTCAGCAGTGGAGAAATGCTTTGACATTCGTTGCCAACTTAAGTGGCTGCACCTCTCACAATCGATATGAATCTCAACTCATTGATGAAATTGCTGAAGAAGTAAGGACAAAAATAGAACTTAAGTTGCCAACAAAGGATGATGATGATCTGGTTGCAATTGATACAAAATTTAAAAAAGTGTGTTCATGTTTAAGCCCAGAGTCAAAAGAAGATGTTCTCTTTCTTGGAATATGGGGCATGGGCGGGTTAGGGAAGACAACTCTTGCCTCTGTTGTTTGTAAAAGAATCCAGAGAGAGTTTGAAGATTATTGCATTCTCCGAGTTGGAGATGTTTCAAAGGAAGGAGATCTTGTTAACTTACAAAATCAACTTCTTTCACATCTGAAATTAAGGAGCAGAGTAATTGAAACTTTAGTCCAAGGAAGAGATAACATCAGAAACCTTTTGTACAAAAAAAGGATTCTTATTGTCCTAGATGATGTGAGAGCTATAGAACAACTGGAGAATTTGGTTGGAAACAAGGAGTGGTTTGGCCCCGGAAGCAGAATAATTGTTACTACTCGGGACAAGAACCTTCTTAGTCAACATGGTGCGTTTAAAATCTACAATATGGAAGTCTTGAATCCTGATGAATCCCTTCAGTTATTTCATCAAGAAGCATTTAAAGGAGAACATTTACCAAAAGAAGAGTACCTGGAGTTATCTAAAAAGTTTGTTAAGTATACCGCAGGCCTTCCTTTGGCACTTAAGGTGTTAGGATCTAATCTTCGGAGAAGAAGCATTGATGAATGGGAAGATGCTTTAGATGAGATAAGAAAAGATCCAGATGGTGGAATAATGAACATACTCAGGATAAGTTATGATATGTTGAAAGAAGGGTACAAGACCATATTTCTTGATATTGCATGCTTCTTTAAGGGGTGGTACAGAGATAAAGTGACAAAAATATTGAAAAACTGTGGCCTTAATCCAACAAGAGGAATAAGTGATCTCATAGGTAAATCATTGATTACTTGCAACAAAGGAGTTTTAGGGATGCATGATTTGCTTGAGGAAATGGGTAAAAATATAGTTTTTCAAGAATCTGAAAAGGATCCTGGAAAACGCAGTAGGTTGAGCTCTCCAGACGATATTGATCAAGTATTGAAAGAAAATACTGGAACTGAGATCACTGAAGGCATGGTTTTAAAGCAGCAAATTGAATCATATAATAAAGCAACACACTGGCACCCTGAAGCTTTATCTAAGATGCGCAACCTTAGACTTCTTGTCATATTATGTGACTTGCACCTTTCGTGTGGTTTCAAATGTCTTCCTAGCTCATTGAAAGTTCTTATTTGGGCAGAATGTCCTTTGAAATCTCTACCACTTGAGGTAGAACTACGTAAGATTGTTCACTTGCAGATGAATAATAGCAAACTAAAACATGCTTGGAATGGAAGTCAGGTGTTTGAGGCACTGAAAGTTATTGACTTGAGTTATTCCAAGGATTTGATTCAAACTCCGGATATTTCTAATGTTCCATTACTTGAGGAGCTCTTCTTTGATGGTTGTGTATCGCTTGTTGGGCTTCACCAATCTGTAGGTCAGCATAAAAAGCTGACAGTATTGAGCCTGATAGGCTGCATAAATCTTGAAAAATTGCCAAATAAATTGGAGATGTCTTCATTGAAAAGGCTCTTTCTTTGTGGTTGTTCAAACATAAAGCTACTTCCGGATTTTAGTGAGAGTATGGAAAGTTTGTCAGTGTTGAATTTAATGAAGTGCTCAAAACTTCTTTGCATTCCAGACACCATTACTAATTTGAAATCACTCAGACTTCTCAACTTGTCCGGATGCTCAAAAGTTTGCAAGCTACCACATAACATAAATGAAAACAAGGGTTTAGAGGACCTTGATCTAAGCGAAACTTCCATAAGGTTTGTGAATCCTTCCTTGTTTCAAATGGAAAATCTCAAGAGGCTTTCTTTTCATGGATGTAGTGGGCCGGTATCCAACAACTGCGAGTTAACATCGACTTTTGAGTTCGGCATTTTTGAAGAACCAGATCTCAACCGCCTAAATTTGCCTCCTTCTATCTCAGGACTTTCCATGTTAAATAGTTTTGATTTAGGCTATTGCAATCTCCATCATGGATTGATTCCTAAAGATCTAGACAAGTTATCTTCCTTGGAGACACTAATTTTAAGTGGGAATACTGATCTTGTGGTACCTGAGAGTGTATCTAAGCTCCCTAACCTACATTTTCTTGAAGCAGAAGGTTGCATGGGCTTTGTCAATCAATCTGTGCTTCAACATCATTCAGACTCTCTTGTGGAAGCTGGTTTGTTCTTAGATCTATGGAAGTTCTGGAAGCAATTCAAGCCAAATAACAGCGAGCTCTTGTGTCAGGTTAGAGATCACAGTTATCCTATCACATACTTTGAGATTCCTCCTAAGTTTGGGAATGAGATACTCTTTCCAATGGGTCCAAGATTGTCAAAACTTGAATCAAGTGCATCAATCATAGTGGACATCCCTAATGAGCGTGGTAGCAATGAGTGGTGGGGAATCATTGTGTTTATTGCCTTTGAGCCTCTGGAATCTTCTACATCATTTCCAAGTCTGAAATTCAATTGGAGCTTTGAATCGTCGCATCCTGAAGCTGGCCCCTCCTTATATCTCTCTTCTAGTGCTGCAAGGGCACATTATAGTTGCTGCCTTGTAACAATGATAATGACAGACAATTACATATACATTCAACTGCATCATAGAAAATATGACAACATAAGTGAGTCAAAGGCCTTTAGCAAACATCGTAAGCCAGCTTTTAGTGAGAATAGTAGGATGCGTTTTGATGTGCAAGGGGGGGAGCTAAAGATGAAGGAGTGTAGCTATGATGTATTATGTAAGGAAGATTTTAAATCTAAGGTCTTGCTTGATTCGGAAAATAGGAGTGATGACAATGGATCTAATACCGGGGAATCAAGCGGTGAAGAATCAGAGATCAGCAGTGAAGATGAAACAGAAGGAAAATTTGCTCAGTGA 3441 0.3897 MALHGGGSSKWKYHVFLSFRGEDTRLGFTDHLYTALQKRSIDTFRDNEELRKGEFISKQLVHAIEDSLCAVVVLSPNYANSGWCLDELKQIVETKGSSGMLVPVFYDVHASDVRYQKGKFEEAFRKHEERYKENRDKVQQWRNALTFVANLSGCTSHNRYESQLIDEIAEEVRTKIELKLPTKDDDDLVAIDTKFKKVCSCLSPESKEDVLFLGIWGMGGLGKTTLASVVCKRIQREFEDYCILRVGDVSKEGDLVNLQNQLLSHLKLRSRVIETLVQGRDNIRNLLYKKRILIVLDDVRAIEQLENLVGNKEWFGPGSRIIVTTRDKNLLSQHGAFKIYNMEVLNPDESLQLFHQEAFKGEHLPKEEYLELSKKFVKYTAGLPLALKVLGSNLRRRSIDEWEDALDEIRKDPDGGIMNILRISYDMLKEGYKTIFLDIACFFKGWYRDKVTKILKNCGLNPTRGISDLIGKSLITCNKGVLGMHDLLEEMGKNIVFQESEKDPGKRSRLSSPDDIDQVLKENTGTEITEGMVLKQQIESYNKATHWHPEALSKMRNLRLLVILCDLHLSCGFKCLPSSLKVLIWAECPLKSLPLEVELRKIVHLQMNNSKLKHAWNGSQVFEALKVIDLSYSKDLIQTPDISNVPLLEELFFDGCVSLVGLHQSVGQHKKLTVLSLIGCINLEKLPNKLEMSSLKRLFLCGCSNIKLLPDFSESMESLSVLNLMKCSKLLCIPDTITNLKSLRLLNLSGCSKVCKLPHNINENKGLEDLDLSETSIRFVNPSLFQMENLKRLSFHGCSGPVSNNCELTSTFEFGIFEEPDLNRLNLPPSISGLSMLNSFDLGYCNLHHGLIPKDLDKLSSLETLILSGNTDLVVPESVSKLPNLHFLEAEGCMGFVNQSVLQHHSDSLVEAGLFLDLWKFWKQFKPNNSELLCQVRDHSYPITYFEIPPKFGNEILFPMGPRLSKLESSASIIVDIPNERGSNEWWGIIVFIAFEPLESSTSFPSLKFNWSFESSHPEAGPSLYLSSSAARAHYSCCLVTMIMTDNYIYIQLHHRKYDNISESKAFSKHRKPAFSENSRMRFDVQGGELKMKECSYDVLCKEDFKSKVLLDSENRSDDNGSNTGESSGEESEISSEDETEGKFAQ 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120830g00049 1146 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 153 IPR035897 -
Stsc120830g00049 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 439 IPR027417 -
Stsc120830g00049 1146 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 178 - -
Stsc120830g00049 1146 MobiDBLite consensus disorder prediction 1112 1146 - -
Stsc120830g00049 1146 ProSiteProfiles TIR domain profile. 11 176 IPR000157 GO:0007165
Stsc120830g00049 1146 Coils Coil 124 144 - -
Stsc120830g00049 1146 MobiDBLite consensus disorder prediction 1116 1130 - -
Stsc120830g00049 1146 Gene3D - 177 339 IPR027417 -
Stsc120830g00049 1146 SMART till_3 12 151 IPR000157 GO:0007165
Stsc120830g00049 1146 FunFam Disease resistance protein (TIR-NBS-LRR class) 346 429 - -
Stsc120830g00049 1146 SUPERFAMILY L domain-like 540 895 - -
Stsc120830g00049 1146 Pfam TIR domain 12 189 IPR000157 GO:0007165
Stsc120830g00049 1146 SUPERFAMILY "Winged helix" DNA-binding domain 417 520 IPR036390 -
Stsc120830g00049 1146 Gene3D Ribonuclease Inhibitor 692 760 IPR032675 -
Stsc120830g00049 1146 Gene3D Ribonuclease Inhibitor 537 691 IPR032675 -
Stsc120830g00049 1146 Gene3D Ribonuclease Inhibitor 761 911 IPR032675 -
Stsc120830g00049 1146 Pfam NB-ARC domain 193 427 IPR002182 GO:0043531
Stsc120830g00049 1146 Gene3D - 7 176 IPR035897 -
Stsc120830g00049 1146 Gene3D - 344 429 IPR042197 -
Stsc120830g00049 1146 PRINTS Disease resistance protein signature 738 754 - -
Stsc120830g00049 1146 PRINTS Disease resistance protein signature 286 300 - -
Stsc120830g00049 1146 PRINTS Disease resistance protein signature 380 394 - -
Stsc120830g00049 1146 PRINTS Disease resistance protein signature 212 227 - -
Stsc120830g00049 1146 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 693 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120830g00049 Stsc-Chr120830 370163 377190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120830g00049 8 811 WRKY Transcription Factor Family AT4G12020 30.896 3.76e-84 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120830g00049 - - adu:107489070 1487.24