Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120830g00048 ATGTCCAGAGAGATTTCATCAACTCCAGGAGCTTTCAGGCTCCGTTGGGACGTGTTCTTGAGTTTTAGGGGAGAAGACACGCGCGACCCCTTCATAGCACCACTCTACCACGAGCTCCAATCGCGTGGCGTTCGAGCCTTTCGCGACAACGAAGGATTGGAGCGCGGCGATGACATTGCTCCTACTCTGCTCGAAGCCATTGACGATTCAGCCGCCTCCATTGTCGTTCTCTCTCCTAAGTATGCGGATTCCCGGTGGTGCCTTGAGGAGCTGGCAAAGATCTGTGAGTGTGACAAGCTCATTCTCCCTGTGTTCTATGGTGTTGATCCATCTGATGTTAGGAAACAAAAGGGTCCCTTTGAAGAGGATTTTAGGATCCAAGAAAAGAAGTTTGATGCAGTTAAGGTTTTGAGGTGGAGGGAGGCCATGAAGAAAGTGGGTAACCGTGCTGGTTTTCCTCTTAAGGATAAAAACAGTGCTGAAGACCGAGCTACTTTGATAAGAGCACTGGTGGCAAGGGTTTTGAAAGAATTGAGCAACATTCGCTTAGGTGTGGCTCAGTTTACAGTTGGCCTCGATAGCCGCGTCGTTGAGTTGATGAATTCTCTGGAGCTCAAATCCAACGGCTTCAAATTGTTTGGACTCTATGGTATGGGCGGAGTTGGTAAAACGACGCTTGCCAAGACTCTTTACAACAACCTCGTTGCTCATTTCGAGCACCGAGCCTTCATTCCAAATGTCAGAGAAGCTTCATCCTCCAAAGATAACGGCTTGGTTTTGCTTCAAAAGAGAATTATCGGTGATCTAAAACCTGGTGATTCATCCAACGCCATTCAAATCAATAGCATAAATTCAGGCATTGCTGCAATCAAAAGGTTAGTTGAAGAAAACAGAGTGCTTATAGTCTTGGACGATGTTGATGATGCAGAACAGCTTCATTCTCTGATTGGGAGAAAGGAATGGTTTTCCCAAGGAAGCCGCATTATCATCACTACAAGGGACATGAAACTGTTACTCGACAACAATGTTGATTTGGCTTATGAGGTAAAAGTTTTGAGTTCAATTGATTCATTGCAACTATTCAGTAACCACGCTTTTAAAAGAAAGAATCCTCCTACCCAAGAATTTCTTGAGCTTTCGGAGCAAATAGTGAAGCTAACTGGAGGATTACCCTTGGCATTAGAAGTTTATGGATCATTCTTGTTTGACAAAAGGAGGATAGAGGAATGGGTGGACGAACTCGAGAAGCTGAAGCGGATTCGGCCGAAAAACCTTCAAGATGTGCTCAAGATAAGCTACGACGGATTGGATGAAGAAGAGAGGACGGTGTTCTTGGACATTGCTTGTTTGTTGGTGGAAATGGAGATGAAGAGAGATGAAGTGGTTGATGTTGAAAGGGGTTGTGGTTTTAGTGCAGAGGTAGCGGTTACGGTTCTTACGTTAAGGTGTTTGATTAAGATAGGTGAGGACAATAGTGTAATTGTGCATGATCAAATCAAAGAGATGGGAAGGCAAATTGTTGCGGATGAAGGGCGTGTTGATGGTGGAATGAGAAGCAGGTTGTGGAAACGGGATGAAATATTAAACGTTTTGCGATGGAATAAGGGAACAAGATTCATGCAAGGGATCACCCTCAATTTCCAGAGAAAATATTTTCTAAATGATGCAGAGGCTGAAATAATTTTGAGGCACAAGCTTCAATGCATGTCCATCCTAACAAACCCATCAGTACTTTTTAAATCAATCCTTGGCAAGAAAGAGAAAGGGCTTACACTCCAGGCAAAATCATTTAAATCAATGGTGAACTTGAGGCTACTTGAGATCAATAATTTGAGAATGGAAGGGAAGTTTACATTTCTTCCCTCTAATATCAAGTGGCTACAATGGCAAGGGTGTTCTTTCAAAACTCTGCCTTCTGACTTTTGGTCAAAGAAATTCACTGTCCTTGATCTGTCACACAGCAATATTGAAAGCTTGTGGGGCTTGAGAACCAAAAAGGTGCCAGATAATTTGAAGGTTCTGAATCTCTCCCACTGTAATAACCTAACCTCAATTCCTGACTTATCTTCTTGTACAAGTTTAGACAAGCTTGTACTTGAAAGATGCACTTCTCTAACAAGTATTCATGAGTCAATTGGTAGTCTCACTGCATTACATGACTTGAATTTGAGTTATTGTTCAAATCTTGAGGGACTTCCCTATGATGTCTCTGGGATGAAAAATCTAGAGAACATGTTGCTCTCCGGCTGCGCGAAACTGAAAGCCTTGCCATCAAACATTGGTCACATGAAGTCACTGAGAAAATTACTGGCTGATAACACTGCCATTGCTGAGATACCTCAATCAATCTTCGGCTTGGAGAGACTTGAAATGCTTGTATTAGATGGTTGCCAAAATCTGAAAAGGCTTCCGAAATGTATCGGAAACCTGACTTCTCTGCAAGTACTCTCCCTTGACCAATCTGCATTGGAAGAACTACCTAACTCTATTGGATCACTTGAAAGCCTTGAGATACTTAGTTTGATATGGTGTCAATCTCTCACTGCAATTCCTGAATCTGTTGGCAATCTCATATCATTGACAAGACTTTCAATTAATTGCAGTGAAATTACAGAATTCCCTTCTTCTATTGGTTCATTATCTTCTTTGAAGGAGCTATCAGCTGGACAATGCGAGTTTCTCGACAAATTGCCGGACACAGTTAACGGGTTAGCTTCAGTAGTTGAGCTTCAGTTAGATGGTACGGCGATTGCAAAGTTACCAGATCAGATTGGAGCTATGACAATATTAAGGAAACTTGAAATGAGGAATTGCATTAATCTGAAATCATTACCTGAATCTATTGGCAGATTAGAAGCACTAACTACTTTAAACTTAAGCAATTCAGCTATAGAGGAACTTCCAGAGTCCATTGGCTTGCTAGAGAATCTCGTTACATTAAATATGAACAAATGCAGAATGCTCAAACAGCTTCCAACATCAATTGGAAAATTGAAGGAATTGCATCACTTGATGATGGAGGAAACTACTCTAACAAAATTACCTGAAACATTTGGTTTGCTCTCAAACTTGATGACACTTGAAATGGCAAAACGGCCACATTTGGTTGCAAATGATGATAGATTTCCTGCAGAAAGTTCTCATCATTCTTTTCAACTTCCTACTAATTTCTATGATCTGACATTGCTAAAGGTGTTGGATGCTCGAAACTGGCGAATATCAGGGGAAATTCCCAATGCTTTTGAGAAACTGTCATCATTAGAAAAATTGGATTTATCTCAAAACAATTTCCATAGCCTTCCATGCAGCTTGAAGGGACTCTCAATCCTCAAAAGGCTTTACTTGCGAAATTGCAATGAGTTGAAATCTCTGCCTTCTCTTCCTTCAAGCTTGATTGAGTTGAATGCTGAAAACTGCACCTCTTTGGAAAATGTATCTGAGGTTTCAAACTTAGAATGCTTACAAGAGCTAGATCTCACAAACTGCATGAAAGTGGTGGATATTCCTGGTCTTGAATGCTTGAAATCTTTGAGAAGATTGTATTTGAGTGGTTGTATTGCATGCTCACCCCAAGTAAGGAAAAGATTTTTAAAGGCTGCATTAAGGAATATAAGAAACTTGAGCATGCCGGGAACCAAATTTCCCGATTGGTTTTCAAGACAAGCAGTGAACTTTACCAAGAACAAAAACCGAGAGCTAAAAGGTATTGTTATATGCATTGTTCTTTCCATCAACCATAACATTCCCAACAATGAAATTATGCCTGGAGTTGTTGATGTTATTGCAACTGTTCTCAAATCGGGCAAACAAGTGTATAGTACTTCAGTATACTTACGTGGGGTGCCAAGAACGAACCAAGAACACATGCACTTGTGTAGGTTTGCATATTTTCATCCATTGGTGCATTTTTTGAAAGATGGTGGCACCTTATGTGTGGCTATGAAAAACCCTCTTGTTGATAAGAGGTTGGAGCTGAAAGATTCTGGAATTCATTTGATCTTAGAAGGGGACGATGATTACGGTGGAGACGAAAGTGCTGTGGATTCAAGCTTGAAATCTGTCTCAGAGAAAATGGCAGAGTTTTTTAACTCTGTAGAAGATGCATATGATCCTGAACCTGAGTAA 4125 0.4107 MSREISSTPGAFRLRWDVFLSFRGEDTRDPFIAPLYHELQSRGVRAFRDNEGLERGDDIAPTLLEAIDDSAASIVVLSPKYADSRWCLEELAKICECDKLILPVFYGVDPSDVRKQKGPFEEDFRIQEKKFDAVKVLRWREAMKKVGNRAGFPLKDKNSAEDRATLIRALVARVLKELSNIRLGVAQFTVGLDSRVVELMNSLELKSNGFKLFGLYGMGGVGKTTLAKTLYNNLVAHFEHRAFIPNVREASSSKDNGLVLLQKRIIGDLKPGDSSNAIQINSINSGIAAIKRLVEENRVLIVLDDVDDAEQLHSLIGRKEWFSQGSRIIITTRDMKLLLDNNVDLAYEVKVLSSIDSLQLFSNHAFKRKNPPTQEFLELSEQIVKLTGGLPLALEVYGSFLFDKRRIEEWVDELEKLKRIRPKNLQDVLKISYDGLDEEERTVFLDIACLLVEMEMKRDEVVDVERGCGFSAEVAVTVLTLRCLIKIGEDNSVIVHDQIKEMGRQIVADEGRVDGGMRSRLWKRDEILNVLRWNKGTRFMQGITLNFQRKYFLNDAEAEIILRHKLQCMSILTNPSVLFKSILGKKEKGLTLQAKSFKSMVNLRLLEINNLRMEGKFTFLPSNIKWLQWQGCSFKTLPSDFWSKKFTVLDLSHSNIESLWGLRTKKVPDNLKVLNLSHCNNLTSIPDLSSCTSLDKLVLERCTSLTSIHESIGSLTALHDLNLSYCSNLEGLPYDVSGMKNLENMLLSGCAKLKALPSNIGHMKSLRKLLADNTAIAEIPQSIFGLERLEMLVLDGCQNLKRLPKCIGNLTSLQVLSLDQSALEELPNSIGSLESLEILSLIWCQSLTAIPESVGNLISLTRLSINCSEITEFPSSIGSLSSLKELSAGQCEFLDKLPDTVNGLASVVELQLDGTAIAKLPDQIGAMTILRKLEMRNCINLKSLPESIGRLEALTTLNLSNSAIEELPESIGLLENLVTLNMNKCRMLKQLPTSIGKLKELHHLMMEETTLTKLPETFGLLSNLMTLEMAKRPHLVANDDRFPAESSHHSFQLPTNFYDLTLLKVLDARNWRISGEIPNAFEKLSSLEKLDLSQNNFHSLPCSLKGLSILKRLYLRNCNELKSLPSLPSSLIELNAENCTSLENVSEVSNLECLQELDLTNCMKVVDIPGLECLKSLRRLYLSGCIACSPQVRKRFLKAALRNIRNLSMPGTKFPDWFSRQAVNFTKNKNRELKGIVICIVLSINHNIPNNEIMPGVVDVIATVLKSGKQVYSTSVYLRGVPRTNQEHMHLCRFAYFHPLVHFLKDGGTLCVAMKNPLVDKRLELKDSGIHLILEGDDDYGGDESAVDSSLKSVSEKMAEFFNSVEDAYDPEPE 1374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120830g00048 1374 SUPERFAMILY L domain-like 593 915 - -
Stsc120830g00048 1374 ProSiteProfiles Leucine-rich repeat profile. 1086 1108 IPR001611 GO:0005515
Stsc120830g00048 1374 Pfam TIR domain 16 180 IPR000157 GO:0007165
Stsc120830g00048 1374 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 152 IPR035897 -
Stsc120830g00048 1374 Gene3D Ribonuclease Inhibitor 756 1036 IPR032675 -
Stsc120830g00048 1374 ProSiteProfiles Leucine-rich repeat profile. 670 692 IPR001611 GO:0005515
Stsc120830g00048 1374 Gene3D - 185 344 IPR027417 -
Stsc120830g00048 1374 ProSiteProfiles TIR domain profile. 14 178 IPR000157 GO:0007165
Stsc120830g00048 1374 SUPERFAMILY L domain-like 895 1216 - -
Stsc120830g00048 1374 ProSiteProfiles Leucine-rich repeat profile. 953 974 IPR001611 GO:0005515
Stsc120830g00048 1374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 447 IPR027417 -
Stsc120830g00048 1374 SMART till_3 15 149 IPR000157 GO:0007165
Stsc120830g00048 1374 Gene3D - 351 437 IPR042197 -
Stsc120830g00048 1374 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 863 IPR044974 GO:0006952
Stsc120830g00048 1374 SMART LRR_typ_2 810 833 IPR003591 -
Stsc120830g00048 1374 SMART LRR_typ_2 904 927 IPR003591 -
Stsc120830g00048 1374 SMART LRR_typ_2 998 1020 IPR003591 -
Stsc120830g00048 1374 SMART LRR_typ_2 1084 1106 IPR003591 -
Stsc120830g00048 1374 SMART LRR_typ_2 857 880 IPR003591 -
Stsc120830g00048 1374 SMART LRR_typ_2 763 786 IPR003591 -
Stsc120830g00048 1374 SMART LRR_typ_2 951 974 IPR003591 -
Stsc120830g00048 1374 Pfam Leucine rich repeat 1063 1119 IPR001611 GO:0005515
Stsc120830g00048 1374 Pfam NB-ARC domain 199 423 IPR002182 GO:0043531
Stsc120830g00048 1374 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 180 - -
Stsc120830g00048 1374 Gene3D - 12 184 IPR035897 -
Stsc120830g00048 1374 Gene3D Ribonuclease Inhibitor 1044 1235 IPR032675 -
Stsc120830g00048 1374 Gene3D Ribonuclease Inhibitor 588 755 IPR032675 -
Stsc120830g00048 1374 SMART LRR_bac_2 1128 1148 - -
Stsc120830g00048 1374 SMART LRR_bac_2 1107 1127 - -
Stsc120830g00048 1374 SMART LRR_bac_2 1084 1103 - -
Stsc120830g00048 1374 SMART LRR_bac_2 951 970 - -
Stsc120830g00048 1374 SMART LRR_bac_2 668 688 - -
Stsc120830g00048 1374 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Stsc120830g00048 1374 PRINTS Disease resistance protein signature 666 682 - -
Stsc120830g00048 1374 PRINTS Disease resistance protein signature 387 401 - -
Stsc120830g00048 1374 PRINTS Disease resistance protein signature 293 307 - -
Stsc120830g00048 1374 PRINTS Disease resistance protein signature 212 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120830g00048 Stsc-Chr120830 361704 370066 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120830g00048 16 886 WRKY Transcription Factor Family AT4G12020 29.359 1.05e-74 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120830g00048 - - lang:109340539 1578.53