Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120830g00045 ATGTCGCCGGAAAGTGACGTCAAGATGCCATCTCCGGTATCTTTCCGTCTCCGTTGGGACGTGTTCCTGAGCTTCCGCGGCACCGACACCAGGGAGGCCTTCACGAAGGACCTCCATGGCGCTCTCGAAGCCGCCGGCGTGCGCACCTTCATCGACAACGAAGGACTACAGCGCGGCGAGTCGATCTCGCCGAGTCTGGTGGAAGCAATTGCAGATTCCGCCGCCGCCATTGTTATTGTGTCACCGGACTACGCTTCGTCGCACTGGTGCCTTGAGGAGCTGGCGAAGATCTGCGAGTGCGGTTGGAAGCTGGTGCTTCCGGTTTTCTACCGGGTTGACCCGTCAGATGTCCGAAAACAGAAGGGGCCTTTTGAGAAAGCGTTTCGGTTACACTCAGAGAGTGACAGGTTTAGGAATAAGGTTGGGAGTTGGAGGAGTGCTATGAACAAAGTCGGTGGAATTGCTGGTTGGGTTTTTCATGATCACAGCAACAAGGATCAGCTAATTCGAGTTCTGGTGCAAACGGTTTTAAAGCAGATGAGGAACACTCCATTGACAGTGGCACAATATGCAGTTGGGCTTGATGACAGAATTGCAGAGCTAAGGAAGTTACTTGATGTAAAATCCAATGATGTAAAAGTGATAGGATTGTATGGAATGGGAGGGGTTGGTAAGACAACTCTTGCCAAGGGACTCTTCAACAACCTTGTTGATCATTTTGGTAGACGAAGCTTCATCTCAAATGTTAGAGAAGTTGCAAACAATGAAGATAGTATGGTTTCACTCCAGAGAAGAATTCTTGGTGATCTTTCTCCTGGAGCTGTGACTCACATCAATGATGTCAATGCTGGTATTTCTGCAATCAAAGGAATCGTAGAGGAAAACCGAGTTCTGGTTTTTCTTGATGATGTTGATGATGCGAAACAGCTTGAGTTCTTGATTGGAAAGAGAGAATGGTTTGCTAAAGGAAGCTGTGTCGTGGTTACTACGCGAAACAGAAGCGTTTTAGCAGAAAGTTATGTTAATTTGAACTATGAGGTGAAGGAATTGAAAGAGTCTCAAGCACTTGAATTGTTCTGTTACCATTCCATGAGAAGAAAGGCTCCTTCTGCTGATGGTGATTTTCTCAATCTCTCAGAACAAATTGTGTCCCTCACAGGAGGATTGCCTCTGGCCTTGGAAGTCTTTGGCTCGTTCCTATTTGATAAGAGGACAATTAACGAATGGAAAGACGCGCTGTCAAAGCTGAAACGGATTCGGCCGGACAATCTTCAAGGTGCTCTGAAGATTAGCTTTGATGGGTTAGATGAACAAGACAAGTGTGTGTTCCTTGACGTTGCTTGCTTGTTAGTGCAAATGGAAATGAAGAGAGATTATGTGGTTGATATACTGAATGGTTGTGGTTTTAGAGGGGAGATTGCAATAACAGTTCTAACTACAAAGTGTTTGATTAAGATCATTAAGGATGGTGTAGTGTGGATGCATGATCAGGTTAGAGACATGGGAAGGCAAATAGTTCAAAATCAAAGCATTGTGGATTGTGGTCTGCGTAGCAGGTTATGGGATCGCCATGAAATTTTGGGGGTCTTGAAGAATAAGAAGGGAACAAGAAAAGTTGAAGGTATTGTCCTTGATTGTGTAAAGAGGAGTCTGGCAAAACCAAGAGACCGTACTGCTGAAGAAATTACCTGGGACAATTTTCTACAAATGCCAGGTTACAAAACAGCATCAGCATATGTGAAGGCAAAGTACAAGAACTATTTGGATCATAGAGAAGAGAAAGCAAAAGAACTTTCACTGGATACAAAGCAATTCCAGCCAATGGTTTCATTAAGGTTGCTTCAAATTAACTATTCAAGACTTGAAGGACAAGGTAAATATCTCCCTCGAGGAATAAAGTGGTTACAATGGAAAAAATGTCCTCTGAAGAACATGCCTTCTTCCTATTATCCATTGGAACTTGCCGTGCTTGATCTCTCAGAAAGCAAGATTGAAACACTCTGGGGAAAGCATCATAATAACAAGGTAGCTGAGTGCCTGATGGTTTTAAACCTCTCCAATTGCCACCACTTAGTTGCAATTCCAGATTTAACTGGTTACCATTGTCTAAAAAAGATTGTATTGGAAAACTGCACTGGTCTAAAAAGGATTCATGAATCACTTGGAAATCTAAGTACCCTGGTTCACTTGAACTTAGGCACCTGCTATAACCTTGTTGAGCTACCAAGTGATGTCTCTGGGTTGAAACTTCTTGAGGACTTGATTCTTTCGGGCTGCCGGAAATTGAAGGCATTACCAAAGGATCTAAGCTGCTTGGTCTCTTTAAGAAAGCTTCTTGTTGATGAGACTGCCATAACCGAGTTACCTGATTCCATCTTCCACCTTACCAAACTTGAAAAGTTGAGTGCAAGTGGTTGCCATCTTTTGAGAAGGCTACCTAACTGCATTGGGAAGCTCTCTTCTCTGCAAGAATTATTGCTAAACCATACGGCGTTGGACGAGTTGCCGAATTCTATTGGATCTTTGCAGAATCTCGAGAAGCTTGGTTTGGTGGGGTGTAAGTCCCTCTCTATGATTCCAGATTCTGTTGGGACACTAATTTCATTGACACATTTGTTTTTGGATGTCAGTGGAATCAAAGAGTTGCCTGATTCTATTGGTTCTTTATCATATCTAAGGCAATTGTCTGTTAGTGGATGCAATTCTCTTGGTGAATTGCCAATGTCAATAAAGGCATTAGTCTCTCTTGTTGAGCTTCAGTTAGATAAGACACCAATTACCATTTTGCCAGAACATATTGGGGCCATGAAAATGCTACAAAAGCTTGATATGGCAAATTGTAAAGATCTCAAGTTTCTACCTGCATCGATTGGAGACTTGTCGGCCCTTACTACCTTGGACATGTATAATACTAATATCACTGAATTGCCGGAGTCAATTGGAATGTTGGAAAATCTTGTTCATTTAAGGTTAGACATGTGCAAAGAGCTCCAAAGGCTTCCAAAATCCTTGGGAAATTTGAAATCACTGCGCCGGTTACAGATGAAGGAAACAGCAGTTACACAGCTACCTGATAGCTTTGGGATGCTTTCAAGTTTGCTAAAATTAGACATGGAAAGAAGGAATTATTACCTCAATAAGGATAGGGACAACAAGATTATTGAAGAACCCAATTCGGCTGCAATCTTAAGCGGATTTTGTAATCTAACCCTGCTGGAAGAGCTAAATGCACATGGATGGAGAATAGCTGGAAAAATCCCAGATGATTTTGAAAAGCTGTCATCACTAGAAACTCTAAATTTATGCCACAACAATATTAGCAGCCTTCCAGCCAGTATGAGAGGACTTTCCTGTCTAAAAAAGCTTTTGTTGTCAAATTGCAATCAGCTCATGTTTCTGCCACCTCTTCCTTCTGGCTTAGTAGATATTGATGTCGCGAACTGCACCGCATTAAAGCAAATATCTGATATTTCAAACTTAGAAAACATAGAGGAGTTGAACCTTACAAATTGTGAAAAGCTGGAAGACATACCAGGTATTGAGAACTTAAAGTCCTTGAGAAGATTGTACATGAGTGGATGCATTGGATGCTACCATGCTGTGATGAGAAGATTTTCAAAGGTTCTACTTAAGAATTTACGGATTTTGATTATGCCTGAAAGCAAAGGTATTCCGGATTGGATTTCAGGAGAATCAATTGTCTTTTCCGAGAGAAGAAACCGCGAGCTTAAGGGGATTATTTGTGCCGGTGTACTCGCTTTCGACGGTATACCTGAAAACCAAAGAGATGCCTTGCAGTTAGTGGATGTTCAGGCAAAAGTCTTTAATTTGACTGATAATGTATATAGCACTACATTTCGCCTGTTAGGTGTACCTAGGACAAATGAAGACCATATCTTCTTGCACAGATTTGGAGTCCATACTTCATTGGTTCACCAGTTGAAAGATAAATATACCTTGCATTTGACAAAGCGGAATCCACCCTTTGTTCAGGAGTTGGAGCTGAAGAGCTGTGGAATTCATTTGGTCTTCGAAGGTGACGATGACTATGAAGGAGATGAAGAATCACTTGACGAATGCCAGTATTCGGTGTCACAAAAATTAGCCAAGTTCTTCAATTCTTGTCATTGCCCAAGATCGCCCATGCATGTGAAAACAAGCACATCAGATGAACCACTTGAGATTCAGAGCATAAGAAGAACAAGCGCAGTTCCAGATACATGGCTTCGTTCTATCATTTCTAGTGCAATACTTTTCTGTGCTCTGAGCTATTTATACTTCAGATACCTCAATTGTTAA 4299 0.4203 MSPESDVKMPSPVSFRLRWDVFLSFRGTDTREAFTKDLHGALEAAGVRTFIDNEGLQRGESISPSLVEAIADSAAAIVIVSPDYASSHWCLEELAKICECGWKLVLPVFYRVDPSDVRKQKGPFEKAFRLHSESDRFRNKVGSWRSAMNKVGGIAGWVFHDHSNKDQLIRVLVQTVLKQMRNTPLTVAQYAVGLDDRIAELRKLLDVKSNDVKVIGLYGMGGVGKTTLAKGLFNNLVDHFGRRSFISNVREVANNEDSMVSLQRRILGDLSPGAVTHINDVNAGISAIKGIVEENRVLVFLDDVDDAKQLEFLIGKREWFAKGSCVVVTTRNRSVLAESYVNLNYEVKELKESQALELFCYHSMRRKAPSADGDFLNLSEQIVSLTGGLPLALEVFGSFLFDKRTINEWKDALSKLKRIRPDNLQGALKISFDGLDEQDKCVFLDVACLLVQMEMKRDYVVDILNGCGFRGEIAITVLTTKCLIKIIKDGVVWMHDQVRDMGRQIVQNQSIVDCGLRSRLWDRHEILGVLKNKKGTRKVEGIVLDCVKRSLAKPRDRTAEEITWDNFLQMPGYKTASAYVKAKYKNYLDHREEKAKELSLDTKQFQPMVSLRLLQINYSRLEGQGKYLPRGIKWLQWKKCPLKNMPSSYYPLELAVLDLSESKIETLWGKHHNNKVAECLMVLNLSNCHHLVAIPDLTGYHCLKKIVLENCTGLKRIHESLGNLSTLVHLNLGTCYNLVELPSDVSGLKLLEDLILSGCRKLKALPKDLSCLVSLRKLLVDETAITELPDSIFHLTKLEKLSASGCHLLRRLPNCIGKLSSLQELLLNHTALDELPNSIGSLQNLEKLGLVGCKSLSMIPDSVGTLISLTHLFLDVSGIKELPDSIGSLSYLRQLSVSGCNSLGELPMSIKALVSLVELQLDKTPITILPEHIGAMKMLQKLDMANCKDLKFLPASIGDLSALTTLDMYNTNITELPESIGMLENLVHLRLDMCKELQRLPKSLGNLKSLRRLQMKETAVTQLPDSFGMLSSLLKLDMERRNYYLNKDRDNKIIEEPNSAAILSGFCNLTLLEELNAHGWRIAGKIPDDFEKLSSLETLNLCHNNISSLPASMRGLSCLKKLLLSNCNQLMFLPPLPSGLVDIDVANCTALKQISDISNLENIEELNLTNCEKLEDIPGIENLKSLRRLYMSGCIGCYHAVMRRFSKVLLKNLRILIMPESKGIPDWISGESIVFSERRNRELKGIICAGVLAFDGIPENQRDALQLVDVQAKVFNLTDNVYSTTFRLLGVPRTNEDHIFLHRFGVHTSLVHQLKDKYTLHLTKRNPPFVQELELKSCGIHLVFEGDDDYEGDEESLDECQYSVSQKLAKFFNSCHCPRSPMHVKTSTSDEPLEIQSIRRTSAVPDTWLRSIISSAILFCALSYLYFRYLNC 1432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120830g00045 1432 ProSiteProfiles Leucine-rich repeat profile. 1095 1116 IPR001611 GO:0005515
Stsc120830g00045 1432 Gene3D Ribonuclease Inhibitor 763 921 IPR032675 -
Stsc120830g00045 1432 Gene3D Ribonuclease Inhibitor 922 1138 IPR032675 -
Stsc120830g00045 1432 ProSiteProfiles TIR domain profile. 17 180 IPR000157 GO:0007165
Stsc120830g00045 1432 Gene3D Ribonuclease Inhibitor 572 762 IPR032675 -
Stsc120830g00045 1432 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 893 IPR044974 GO:0006952
Stsc120830g00045 1432 SMART till_3 18 154 IPR000157 GO:0007165
Stsc120830g00045 1432 Pfam Leucine rich repeat 1090 1129 IPR001611 GO:0005515
Stsc120830g00045 1432 Gene3D - 349 436 IPR042197 -
Stsc120830g00045 1432 Gene3D Ribonuclease Inhibitor 1139 1217 IPR032675 -
Stsc120830g00045 1432 SMART LRR_typ_2 960 983 IPR003591 -
Stsc120830g00045 1432 SMART LRR_typ_2 772 795 IPR003591 -
Stsc120830g00045 1432 SMART LRR_typ_2 913 936 IPR003591 -
Stsc120830g00045 1432 SMART LRR_typ_2 819 842 IPR003591 -
Stsc120830g00045 1432 SMART LRR_typ_2 1007 1029 IPR003591 -
Stsc120830g00045 1432 SMART LRR_typ_2 1093 1116 IPR003591 -
Stsc120830g00045 1432 SMART LRR_typ_2 866 889 IPR003591 -
Stsc120830g00045 1432 Gene3D - 180 344 IPR027417 -
Stsc120830g00045 1432 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 182 - -
Stsc120830g00045 1432 SUPERFAMILY L domain-like 494 947 - -
Stsc120830g00045 1432 Gene3D - 15 179 IPR035897 -
Stsc120830g00045 1432 PRINTS Disease resistance protein signature 386 400 - -
Stsc120830g00045 1432 PRINTS Disease resistance protein signature 934 950 - -
Stsc120830g00045 1432 PRINTS Disease resistance protein signature 214 229 - -
Stsc120830g00045 1432 PRINTS Disease resistance protein signature 291 305 - -
Stsc120830g00045 1432 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 157 IPR035897 -
Stsc120830g00045 1432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 445 IPR027417 -
Stsc120830g00045 1432 SUPERFAMILY L domain-like 905 1216 - -
Stsc120830g00045 1432 Pfam NB-ARC domain 201 418 IPR002182 GO:0043531
Stsc120830g00045 1432 Pfam TIR domain 19 182 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120830g00045 Stsc-Chr120830 344394 353495 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120830g00045 19 895 WRKY Transcription Factor Family AT4G12020 28.876 4.78e-70 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120830g00045 - - adu:107489074 2396.7