Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120830g00042 ATGATCAATGACTCTGGAATGATGAATTTGGTGATCAAAGACTGCAAGTCTGTTTTTGATGGGCTGAATTCATTGGTTGATGTTGGCGGCGGAAAAGGCGCCATGGCTAGATTGCTTTCTGAGTCTTTGCCTCATTTGCAATGCGTAGTGCTTGATCTTCCACATGTTGTTGAAAACTTGCAAGATTGCAATAACTTGAAATTTGTTGGGGGTGACATGTTTGATTCAATTCCTTCAGCTGATGCCACTCTTCTTAAGTTAGTTTTGCATGCTTATAGCGATGAAGGTTGTGTCAAGGTACTGAAGAAGTGTAGAGAAGCTATTTCAAGGAAAGGTAAGGAAGGGAAAGTAATAATCATAGACATAGTGATCAATGAGAAGAATGATAAGCGTGAATTGACAGAACCGAAGCTGCTGTTGCCCTGTTGGATCTGTTAA 438 0.4041 MINDSGMMNLVIKDCKSVFDGLNSLVDVGGGKGAMARLLSESLPHLQCVVLDLPHVVENLQDCNNLKFVGGDMFDSIPSADATLLKLVLHAYSDEGCVKVLKKCREAISRKGKEGKVIIIDIVINEKNDKRELTEPKLLLPCWIC 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120830g00042 145 Pfam O-methyltransferase domain 9 134 IPR001077 GO:0008171
Stsc120830g00042 145 PANTHER O-METHYLTRANSFERASE 1 132 IPR016461 GO:0008168
Stsc120830g00042 145 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 145 IPR016461 GO:0008168
Stsc120830g00042 145 Gene3D Vaccinia Virus protein VP39 1 143 IPR029063 -
Stsc120830g00042 145 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 18 135 IPR029063 -
Stsc120830g00042 145 CDD AdoMet_MTases 25 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120830g00042 Stsc-Chr120830 313636 314339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120830g00042 1 129 Monolignol Biosynthesis Gene Families AT5G54160 41.085 3.55e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120830g00042 K22588 - qsu:112018723 211.846