Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120830g00041 ATGGATATCAACAAACTAGTAGAGGGAGCTAATAATGAAGAGTTACTGTTTGAGGCTCAGACCCATTTGCACTACTATACTTTTCATTTCCTTGGTTCTTTGTGCCTCAAAACTGCAATCCAATTGGGAATACCAGACATAATCCATAACAATGGCAACCCTATTACTATACCTGACTTAGCATTGGCACTTAACATTGACTCTAACAAATCTTCTTATTTATACAGGCTCATGCGCTTCTTGGTTTATGTTGGATTCTTTGTTACAACCAAGATTGATGGTGGAAAAGAGGAAGAAGAAATAATGGGGTATGATCTTACACCCTCCTCAAGGCTCCTCCTCAAGAACAATGTCCCAACACTCTCTCCTTTTGTTCAAGCAATGTTAGATCATTCTATACTTCACTCTCCTGAGTTCTTAGCAGAATGGTTCCACAGCAGTGGTGACCTCACGCCATTCCACACTGCACATGGCATGAGTTTTTGGGACTATACTGGCCAAAACAAAGAGTTTAATGGCCTCTTCAGCGAAGCAATGATTAGTGATTCAGGGATGGCAAAGTTGGTTATCAAAGATTTGAAGTCTGTTTTTGAAGGACTGAATTCCATGGTTGATGTTGGAGGAGGCAAAGGAGGTATGGCTAGGCTGATTTCTGAGTCAGTGCCTGGCTTGCAATGCACGGTTCTTGATCTTCCACATGTGGTTGAAAACTTGCAAGATACCAACAAACTGAAATTTGTTGGTGGTGACATGTTTGAAGCTATTCCTCCAGCTGATGCCATTCTTCTTAAGTTAGTGTTGCATTGTCTGAACGATGAAGACTGCGGCAAGGTACTGAAGAAGTGCAAGGAAGCCATTTCAAGCAAAGGGAAGGAAGGAAAAGTGATAATCATAGACATAGTGATCAATGAGAATGATGATGATAAGCATGAATTGGCAGAAGCAAAGCTATATTTTGATATGTTAATGATGACTTTGCTCCCTGGAAGGGAGAGGGAAGAGAAAGAATGGGAGAAACTCTTCTTGGAAGCTGGATTCAGTCACTATAAGATTACACCCATCTTTGGGACGAGATCACTCATTCAAGTTTATCCTTGA 1098 0.4098 MDINKLVEGANNEELLFEAQTHLHYYTFHFLGSLCLKTAIQLGIPDIIHNNGNPITIPDLALALNIDSNKSSYLYRLMRFLVYVGFFVTTKIDGGKEEEEIMGYDLTPSSRLLLKNNVPTLSPFVQAMLDHSILHSPEFLAEWFHSSGDLTPFHTAHGMSFWDYTGQNKEFNGLFSEAMISDSGMAKLVIKDLKSVFEGLNSMVDVGGGKGGMARLISESVPGLQCTVLDLPHVVENLQDTNKLKFVGGDMFEAIPPADAILLKLVLHCLNDEDCGKVLKKCKEAISSKGKEGKVIIIDIVINENDDDKHELAEAKLYFDMLMMTLLPGREREEKEWEKLFLEAGFSHYKITPIFGTRSLIQVYP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120830g00041 365 Gene3D - 6 113 IPR036388 -
Stsc120830g00041 365 Pfam Dimerisation domain 35 82 IPR012967 GO:0046983
Stsc120830g00041 365 Pfam O-methyltransferase domain 140 347 IPR001077 GO:0008171
Stsc120830g00041 365 PIRSF O-mtase 1 365 IPR016461 GO:0008168
Stsc120830g00041 365 PANTHER O-METHYLTRANSFERASE 17 350 IPR016461 GO:0008168
Stsc120830g00041 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 363 IPR029063 -
Stsc120830g00041 365 SUPERFAMILY "Winged helix" DNA-binding domain 13 117 IPR036390 -
Stsc120830g00041 365 CDD AdoMet_MTases 204 302 - -
Stsc120830g00041 365 FunFam O-methyltransferase ZRP4 115 365 - -
Stsc120830g00041 365 Gene3D Vaccinia Virus protein VP39 115 365 IPR029063 -
Stsc120830g00041 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 365 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120830g00041 Stsc-Chr120830 310550 312457 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120830g00041 34 351 Monolignol Biosynthesis Gene Families AT5G54160 31.385 2.64e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120830g00041 K22588 - qsa:O6P43_012698 442.965