Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1207g00001 ATGGCAGAAAGTACAGTTTCCTTTCTGCTGGACAAGATGTCTGCCTTACTTCAAGAAGAAGTAAATCTGCAAAAAGGGGTTCATCAAGAAGTTGAGTACATCAAAGATGAACTGGAGCGCCACATGGCCATCTTAAGGGTGGCTGATGCTCTGGAAGAGAAAGATCCTGAACTCAAAGTATGGCTTCAACATGTCAGAAACATTGCTCTTGATATGGAAGATGCTATAGACGAATTCAATTATCAAGACAACAAGTCATCATCTTCTTTTGCCAAGATCAGGAACATGAAAGCTCGCCATGACATTGCTTCAGAAATACAACAAATCAAATCAAGACTTGACTTCATCTCCAAGGAACGTCCCAGCATATATGGGGTTGGCTCCAGGTCCAGGTCGAGTCCACGGTTGCCATCGAACATTGACTGCCAGAGAGATGCACTTCTACTTGAGGAAGCTGATTTAGTAGGAATTGACAAACCCAAGAAGCAGCTGTGTGATTTGCTTTTCAGCAATGAAGCAGGCCGTTTTGTGATTCCCATTCATGGGATGGGAGGCTTGGGGAAAACTACATTGGCAAAGCAAGTCTATGATGATGCTAAAGTCAAGAAACGTTTCATGATTCATGCTTGGGTCAGTGTCTCTCATCCTTTCAAAATAGAAGAGCTCCTCAAAGACCTTGTTCACCAGCTCCATAATGTCATTGGAAAGCCAGCACCTGAAGAAGTTGGACAGATGAGAAGTGAGAAGCTGAAAGAGGTGATCAAGAATCTGCTTCAGCAAAGCAGGTACCTCATTGTGTTGGATGATGTCTGGCACACAAATCTCTGGGATTCAGTCAAACTTGCATTGCCTAATAACAATAGAGGCAGTAGAGTAATGCTCACCACTCGCAACAAAAACGTAGCATTGTCTTCCAGCGCCGAATTGGGCAAGGACTTTCACCCTGAATTCTTACCTGAACAAGAAGCCTGGTCTCTCTTCTGTAGGAAAACATTTGAGGATAGCTCATGCCCTCCTCATCTTGAAGAAGTTTGTAGGAAGATCTTAAAGATGTGTGGGGGGTTGCCACTGGCAATTGTAGCAATTGGTGGTGCTTTGTCCACAACAGGCAAGGCAAACATAGAAGAATGGCAGATGGTTTATAGAAGCTTTGGGTCTGAAATTGAAGGCAATGACAAACTGGAGAACATGAACAAAGTGCTTTCTTTAAGTTTCAATGAATTACCTTACTATCTCAAGTCTTGTTTGATGTACCTAAGCATCTTCCCAGAATTTCATGCTATCGAGCATATGAGGCTGATCCGCTTATGGATAGCAGAAGGGTTTGTCATTGGAGAAGGTGGAAAGACTCTGGAGGAAGTTGCTGAAAGCTACCTCAAGGAGCTCTTGGATAGAAGTCTGCTGCAAGTGGTAGAAAAAACCAGTGATGGCAGGATGAAGACTTGTCGATTGCATGATGTTTTAAGGGAGATCATAAATTTGAAGTCAAAGGATCAGAACTTTGCAACAATAGCCAAAGAACAATCCATACTCTGGCCGGAGAGAGTTCGACGCCTATCAATCATCAACACCACAAATCACATACAACAAAATAGGACAACATTCCAACTTCGGTCTCTGCTAATGTTTGCCTTATCAGACTCACTTGATCAATTCTCCATACAAGCAGTATGTCCCACTGGTTATAAGTTGCTTAGAGTGCTAGATTTCCAGGATGCACCTTTGGAGGTTTTTCCTGATGGAATTGTTAACCTTGTCCTTCTTAAGTATCTAAGTTTAAGGAATACAAAGGTGAAAAGAATTCCTGGTTCCATTAAGAAGCTGAAACAATTGGAGACTTTGGATCTTAAGCACTCCCATGTCACTGAATTGCCAGTTGAAATTGTTGAGCTTCACCAGCTGCGCCATCTCCTTGTGTACCGCTATGAGGTTGAAACTTATGCATATTTCCACTCAAGGCATGGATTCAAGTTGGCTGCTCCAATAGGAAACATGCAATCTTTGCAAAAGCTGTGTTTTATAGAGGCAGACCAAGGAGGTAAAGCGTTGATGGTTCAATTAGAAAGACTTACTCAACTTAGGAGGCTGGGAATTAGAAAGATGAGGGAAGAAGATGGAGCTGCTTTATGTTCTGCCATTGAGAAGATGATCAATCTCCAATCGCTGTCAGTAACGGCGATTGAAGATGATAAGATCATTGATATACACACAATTTCCAGGCCGCCTCAGTTCCTTCAACGGTTATACTTGAGTGGTCATTTAGACAAGTTTCCACAATGGATTAGCAGCCTCAAGAACTTGGCAAAAGTGCATCTAAAATGGAGCCAGCTAAAGGAGGATCCTCTGGTATATCTTCAAGGCCTGCCAAATCTAAGGCACCTTGAGCTTCTTCATGTGTATGCTGGTGAGACACTGCATTTCAAGGCTAAAGGGTTCCCAAGTCTGAAGGTTCTTAGCCTTGATGATTTAGATGGATTGAAACACATGATAGTGGAGGAGGGAGCAATGCCTGGTCTTAAGAAGCTGATCATGCAGAGATGCAAGTCATTCAAGGAGGCACCAATAGGCATTGAACATCTGAGTAAATTGAAAACAATAGAGTTTTTTGACATGCCTGAAGAATTGATCACATCACTTCTTCCCAAGGGAGGCCAAGATAATTGGAGAGTGCAACATGTCCCAGCTGTTTATTCGTCATACTGGAGAGATCGTGATTGGGATGTTTACTCACTGGAAACTTTTGCAGAGAGAGCCTATGACACAAGTCATGATGCTGCAATCAGTAGTCATGAAATCCGCACATTTTGGAAGGTTTAA 2817 0.426 MAESTVSFLLDKMSALLQEEVNLQKGVHQEVEYIKDELERHMAILRVADALEEKDPELKVWLQHVRNIALDMEDAIDEFNYQDNKSSSSFAKIRNMKARHDIASEIQQIKSRLDFISKERPSIYGVGSRSRSSPRLPSNIDCQRDALLLEEADLVGIDKPKKQLCDLLFSNEAGRFVIPIHGMGGLGKTTLAKQVYDDAKVKKRFMIHAWVSVSHPFKIEELLKDLVHQLHNVIGKPAPEEVGQMRSEKLKEVIKNLLQQSRYLIVLDDVWHTNLWDSVKLALPNNNRGSRVMLTTRNKNVALSSSAELGKDFHPEFLPEQEAWSLFCRKTFEDSSCPPHLEEVCRKILKMCGGLPLAIVAIGGALSTTGKANIEEWQMVYRSFGSEIEGNDKLENMNKVLSLSFNELPYYLKSCLMYLSIFPEFHAIEHMRLIRLWIAEGFVIGEGGKTLEEVAESYLKELLDRSLLQVVEKTSDGRMKTCRLHDVLREIINLKSKDQNFATIAKEQSILWPERVRRLSIINTTNHIQQNRTTFQLRSLLMFALSDSLDQFSIQAVCPTGYKLLRVLDFQDAPLEVFPDGIVNLVLLKYLSLRNTKVKRIPGSIKKLKQLETLDLKHSHVTELPVEIVELHQLRHLLVYRYEVETYAYFHSRHGFKLAAPIGNMQSLQKLCFIEADQGGKALMVQLERLTQLRRLGIRKMREEDGAALCSAIEKMINLQSLSVTAIEDDKIIDIHTISRPPQFLQRLYLSGHLDKFPQWISSLKNLAKVHLKWSQLKEDPLVYLQGLPNLRHLELLHVYAGETLHFKAKGFPSLKVLSLDDLDGLKHMIVEEGAMPGLKKLIMQRCKSFKEAPIGIEHLSKLKTIEFFDMPEELITSLLPKGGQDNWRVQHVPAVYSSYWRDRDWDVYSLETFAERAYDTSHDAAISSHEIRTFWKV 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1207g00001 938 FunFam Probable disease resistance protein At1g61300 142 309 - -
Stsc1207g00001 938 Gene3D - 318 404 IPR042197 -
Stsc1207g00001 938 Pfam NB-ARC domain 159 406 IPR002182 GO:0043531
Stsc1207g00001 938 Gene3D - 5 103 - -
Stsc1207g00001 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 419 IPR027417 -
Stsc1207g00001 938 PRINTS Disease resistance protein signature 257 271 - -
Stsc1207g00001 938 PRINTS Disease resistance protein signature 177 192 - -
Stsc1207g00001 938 PRINTS Disease resistance protein signature 352 366 - -
Stsc1207g00001 938 PRINTS Disease resistance protein signature 606 622 - -
Stsc1207g00001 938 SUPERFAMILY L domain-like 485 874 - -
Stsc1207g00001 938 FunFam Probable disease resistance protein At1g63360 405 494 - -
Stsc1207g00001 938 Gene3D - 405 495 IPR036388 -
Stsc1207g00001 938 Pfam Rx N-terminal domain 6 91 IPR041118 -
Stsc1207g00001 938 CDD RX-CC_like 2 118 IPR038005 -
Stsc1207g00001 938 Gene3D Ribonuclease Inhibitor 525 891 IPR032675 -
Stsc1207g00001 938 Gene3D - 144 309 IPR027417 -
Stsc1207g00001 938 PANTHER DISEASE RESISTANCE PROTEIN RP 33 850 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1207g00001 Stsc-Chr1207 2073 4889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1207g00001 177 620 WRKY Transcription Factor Family AT5G45050 22.474 4.01e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1207g00001 K13457 - gmx:100305458 1427.54