Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc11g00060 ATGGGGATGCATCATAGGAAGCTTTTTTCAGCACAGGATGCCTGCACTGACTTGTGTTACCATGATGATTCTCCTTGTTTGTCAAAATCGGATTGCGACGAGTGCATCAAGAAATGCTCATCTACCCTGAATCCACCACCACCATCCTCATCAGATGCCTTGAATCACAGCAACCATATCATCCCCACCTTCTTGATCATCATCGTTGCCGTCGTATCCGCCACCCTCCTTGCCCTCTTCTGCTACGCCATCTACGTCAAGTTCTACGCCCCCAGGAGGAGGACCAGGTCAAGGAGCACGTTGTTCCCGTTATCGTTTCCGTTGCGGTTACAACAATCACAGGAACGGAACGGCGGCGAGTTTGTGGAGGATGAAGGAGAAGGCGGGACTATGGTGGACCACCCTATCTGGTACATCCGTACGGCGGGTCTCAACAAAAGAATAATCGAGACCATCACGGTTTTGAAGTACAAGAAAGGCGAAGGGTTGGTTGAAGGAACAGATTGCTCTGTTTGTTTGTGCGAGTTTGAAGAAGACGACACTCTCAGGCTCTTACCTAAATGCAACCACGCTTTTCATCTCCCTTGTATTGACACGTGGCTCGCATCTCACACCAACTGTCCCATGTGTAGGGCTCCCATTGTTACAAACCCTAGAGCTTCCAGGCTTCCCTCCATGGACCACCCTGCTGCTAATGTTACTGTTACTGTTACTCCTCTAGAGGAAGATAACAGTTTGAGTGAGATTGTGGTGAGGAACGGAAACGGATCAGAGGAACAAGTTGAAGTTGAAAGAAGGAACATGCAGCCGAGGAGATCGGTGTCTTTGGATTCTTCTTCTGCTGCCAAGATCAGTGCTGCTCTTGTTGCTGCTACTAGTGTTGAATGTAATGGGAATTCAAAGAGGGTTGCTGCTGCAAAAGGTAGTACTAGTTCATCATCTTCTTCGAGTGAGCCTAGTTCCATGAAGAGGTCACGATCATTCAGTGGGAAACACGTGCTTTCCTGGTACGGCCGCAACCACAAGAAGACGAATCCTCCGGTTAGAAGCTTTTGA 1056 0.4877 MGMHHRKLFSAQDACTDLCYHDDSPCLSKSDCDECIKKCSSTLNPPPPSSSDALNHSNHIIPTFLIIIVAVVSATLLALFCYAIYVKFYAPRRRTRSRSTLFPLSFPLRLQQSQERNGGEFVEDEGEGGTMVDHPIWYIRTAGLNKRIIETITVLKYKKGEGLVEGTDCSVCLCEFEEDDTLRLLPKCNHAFHLPCIDTWLASHTNCPMCRAPIVTNPRASRLPSMDHPAANVTVTVTPLEEDNSLSEIVVRNGNGSEEQVEVERRNMQPRRSVSLDSSSAAKISAALVAATSVECNGNSKRVAAAKGSTSSSSSSSEPSSMKRSRSFSGKHVLSWYGRNHKKTNPPVRSF 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc11g00060 351 MobiDBLite consensus disorder prediction 302 351 - -
Stsc11g00060 351 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 58 218 IPR044675 -
Stsc11g00060 351 MobiDBLite consensus disorder prediction 252 277 - -
Stsc11g00060 351 SMART ring_2 169 210 IPR001841 -
Stsc11g00060 351 SUPERFAMILY RING/U-box 163 217 - -
Stsc11g00060 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 219 IPR013083 -
Stsc11g00060 351 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Stsc11g00060 351 MobiDBLite consensus disorder prediction 302 328 - -
Stsc11g00060 351 Pfam Ring finger domain 168 211 IPR001841 -
Stsc11g00060 351 CDD RING-H2_EL5-like 168 211 - -
Stsc11g00060 351 FunFam RING-H2 finger protein ATL54 144 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc11g00060 Stsc-Chr11 277702 278757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc11g00060 65 315 C3H Transcription Factor Family AT1G72220 37.500 1.03e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc11g00060 - - aip:107631077 478.404