Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc11g00051 ATGGACGCCGGAGGCGGCAACAGAGCGGAAGCCGAGCGCTGGCTCTACACCGCCAACAAGCTCCTAAGCGCTCGAGACTTGCATGGGGCTCAGTCCTTCGCCATCCGGGCGCGTGAATCAGACCCTACCTTCGATGCCTCTGAGCTCCTCTTGACGGTCATTGACACGCTCCTCGCCGGCGAGACGCGAATCAACGACCAGCACCGTGACTGGTATGGGATCCTCCAGATCCTCCGTTACACCACCAACATCGACCACATCGCCGCTCAGTACCACCGCCTCGCCCTCCTCCTCGACCCTCACCGCAACCCCTTCGCCTTCGCCGCACATGCCTTCTCCCTCATCCATGATGCCTGGTCAGTCCTCTCCAACCCCGCCAAGAAGGCCATGTACGACGCAGACCTCCGGTTACTCACCTCAACTCCTCCGCCAGCGCCGGCCGCCACGCACCACCACCAGCAGCCGCAGCATCACCAGCAGCACCAGCATAATCCTCTGACGCTAGCTCAGCCTCAGTCTACGCCGAGGAGAAACCCTAGATCTAAGGAAGCTGCGGGCGGTGCGAGCGATCCGAATGTGCAGAATCGAATACCGGCCGAGTCAGCTCGGCAGACTAGGACGGCTTCTGCTGCGGCATCGAACGACGCGTCGGCAACGGAGTTGAGTTTCTGGACCTCGTGTCCTTACTGTTACGTTCTGTATGAGTACCCTAGGGTTTACGAGGAGTGCACCCTGCGGTGCCAGAGCTGCCGCAGGGGGTTCCAGGCGNNNNNNNNNNTATCGTTCTGCAGCTGGGGGTTTTTCCCGTTGGGGTTTTCGCAGGATGCAAAGGACATTAACGGGTTTTCTTCCAATTGGAACCCATTTTCGCCGCTGTTCCCTTGCCCCTTAAAGGGGTCCAATCGGAGGAAGGCGTCTTGGACTTACTACGATGAAGAAGCCGCTGCGGCATTTATTGAGCTTTCGGATCCCAGTGAGGATGATTCTGATGATGGAGATTGGAGAACTGGTGCCAAGAAGGCGAGGAAGAGGTCAAGAGGTTTTACAAGAGATTCCGGTGCTTCTGGTGCCGGTGAAGAAGTTAAGAGGAAGGCTGGGAGACCTAGGAAGGGGATTCCAGGCAGTGCACAGCATCAGAATGTGGGTGGTGGGGCTGTGGATGGCAGCGGCGGAGTTGGTGGGGCTGCAGGGGCAAGTGGTGGAAGGCCAGAGTCTAGTAAGAAGGTTGCATTGGGTGGTTCGAGGAGGAGGGGTGGAGGGAACTTGGATTTGAATGTGGAGTTCAGCAATGACCCGGAAGAGCCTTCCCGTCGCGTCGGCGTCCGTGAAGGGAATGCTGCTGGGAATGCTGAGGATAACATGGAAGGGATTGGGTTTTTTGAGGGGCTTGATGAGTTCCTCAGTAGCTTGCCCATCCTCAATGTTGTGGCAGATGATAAGGCTAAGGGTAATTAG 1455 0.5732 MDAGGGNRAEAERWLYTANKLLSARDLHGAQSFAIRARESDPTFDASELLLTVIDTLLAGETRINDQHRDWYGILQILRYTTNIDHIAAQYHRLALLLDPHRNPFAFAAHAFSLIHDAWSVLSNPAKKAMYDADLRLLTSTPPPAPAATHHHQQPQHHQQHQHNPLTLAQPQSTPRRNPRSKEAAGGASDPNVQNRIPAESARQTRTASAAASNDASATELSFWTSCPYCYVLYEYPRVYEECTLRCQSCRRGFQAXXXXSFCSWGFFPLGFSQDAKDINGFSSNWNPFSPLFPCPLKGSNRRKASWTYYDEEAAAAFIELSDPSEDDSDDGDWRTGAKKARKRSRGFTRDSGASGAGEEVKRKAGRPRKGIPGSAQHQNVGGGAVDGSGGVGGAAGASGGRPESSKKVALGGSRRRGGGNLDLNVEFSNDPEEPSRRVGVREGNAAGNAEDNMEGIGFFEGLDEFLSSLPILNVVADDKAKGN 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc11g00051 484 MobiDBLite consensus disorder prediction 194 208 - -
Stsc11g00051 484 MobiDBLite consensus disorder prediction 321 453 - -
Stsc11g00051 484 SUPERFAMILY Chaperone J-domain 66 135 IPR036869 -
Stsc11g00051 484 CDD DnaJ 70 124 IPR001623 -
Stsc11g00051 484 MobiDBLite consensus disorder prediction 137 208 - -
Stsc11g00051 484 SMART dnaj_3 69 127 IPR001623 -
Stsc11g00051 484 Pfam DnaJ domain 70 132 IPR001623 -
Stsc11g00051 484 Gene3D DnaJ domain 59 141 IPR036869 -
Stsc11g00051 484 MobiDBLite consensus disorder prediction 159 179 - -
Stsc11g00051 484 ProSitePatterns Nt-dnaJ domain signature. 112 131 IPR018253 -
Stsc11g00051 484 ProSiteProfiles dnaJ domain profile. 70 135 IPR001623 -
Stsc11g00051 484 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc11g00051 Stsc-Chr11 234277 236388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc11g00051 10 484 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 39.165 1.49e-95 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc11g00051 - - gmx:100811866 571.237