Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc11g00048 ATGACAAGGAAGAAGATAGAGATAAAGAAGATCGATAACATAAGTTCGAGGCAGGTGACGTTCTCAAAGAGGAGGAAAGGGCTGTTCAAGAAGGCTCAGGAGCTTAACACTCTCTGTGATGCTGAAATTGCTCTCATTGTTTTCTCCACAACCAACAAACTCTTCCAATATGCTACTACTTCAAGTATGGAACAAGTAATAGAAAGACGTCATAATCAGTTGGCACCAATTCAGATATCAGATCATCCATCCGTTGTGCTGCAGGCTGCTGAGAGTGATCATGACTTCAACTATGAAATGCTGCGCAAGAAAGAAGAAGAAAAGGCTCGTGAAATCAGGCAGTTAAACGGTGAAGACCTTCAAGGTTTGACAGTACAGGAACTCAGCAAATTAGAAGAGCAACTTATAAAAGGTCTTTCCAATGCTTCAAAAGTAAAGGATGAAATATTTACGAAAGAGATCCACACCCTTAAGAGAAAGGGAGTAGAGCTGACGCAAAAGAACCATGAATTAAAACAGATGTCATCAAGCGTTCCAAATGGGCAAAGGAATTCATTTATTAATTCCATTGTCTGCAATTCATCGTATCTTCCTGCTGAAGAAGATCATGGTAGGGACACAAATCTAAAGCTGGGGTTACCTTAA 645 0.4016 MTRKKIEIKKIDNISSRQVTFSKRRKGLFKKAQELNTLCDAEIALIVFSTTNKLFQYATTSSMEQVIERRHNQLAPIQISDHPSVVLQAAESDHDFNYEMLRKKEEEKAREIRQLNGEDLQGLTVQELSKLEEQLIKGLSNASKVKDEIFTKEIHTLKRKGVELTQKNHELKQMSSSVPNGQRNSFINSIVCNSSYLPAEEDHGRDTNLKLGLP 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc11g00048 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc11g00048 214 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Stsc11g00048 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc11g00048 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc11g00048 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc11g00048 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc11g00048 214 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc11g00048 214 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Stsc11g00048 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Stsc11g00048 214 Pfam K-box region 97 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc11g00048 214 Coils Coil 98 118 - -
Stsc11g00048 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc11g00048 214 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc11g00048 Stsc-Chr11 220334 226360 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc11g00048 1 214 MADS-box Gene Family AT4G24540 42.411 2.85e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc11g00048 K-box 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc11g00048 - - aip:107631071 311.997