Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc11g00047 ATGACAAGGAAGAAGATAGAGATAAAGAAGATCGATAACATAAGTTCGAGGCAGGTGACGTTCTCAAAGAGGAGGAAAGGGCTGTTCAAGAAGGCTCAGGAGCTTAACACTCTCTGTGATGCTGAAATTGCTCTCATCGTTTTCTCCACAACCAACAAGCTCTTCCAATATGCTACTTCAAGTATGCAGCGGGTAATTGAAAAACATAATCATTACTCAGAAATTCATAGATCTGTTGAGAATAGTGATCAAGATTATGATATGCTGTGCAAGAAAGAGGAACAAAAGGCTCTTGAACTCAGACAATTGAATGGAGAAGATCTTCAAGGATTGACACTAAAAGAACTCCAGAAACTAGAAGAACAACTCCAAAGAGGGTTGACCACTGCTTTAAAAGTAAAGGATGAAAAAATTAAGTTAGAGATCAGCAACCTTAAGAGAAAGGGAGTGAAACTGATGGAAGAGAACAATAATCTGAAGCAGGTCCTGTACATTTTAATTTAG 504 0.381 MTRKKIEIKKIDNISSRQVTFSKRRKGLFKKAQELNTLCDAEIALIVFSTTNKLFQYATSSMQRVIEKHNHYSEIHRSVENSDQDYDMLCKKEEQKALELRQLNGEDLQGLTLKELQKLEEQLQRGLTTALKVKDEKIKLEISNLKRKGVKLMEENNNLKQVLYILI 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc11g00047 167 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 132 - -
Stsc11g00047 167 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Stsc11g00047 167 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Stsc11g00047 167 ProSiteProfiles K-box domain profile. 79 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc11g00047 167 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc11g00047 167 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc11g00047 167 Coils Coil 116 136 - -
Stsc11g00047 167 Pfam K-box region 77 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc11g00047 167 Coils Coil 142 162 - -
Stsc11g00047 167 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc11g00047 167 Gene3D - 14 103 IPR036879 GO:0003677|GO:0046983
Stsc11g00047 167 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc11g00047 167 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc11g00047 167 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc11g00047 Stsc-Chr11 211929 215703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc11g00047 1 161 MADS-box Gene Family AT2G22540 50.000 1.88e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc11g00047 K-box 5.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc11g00047 - - aip:107631071 209.534