Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc11g00046 ATGACAAGGAAGAAGATAGAGATAAAGAAGATCGATAACATAAGTTCGAGGCAGGTGACGTTCTCAAAGAGGAGGAAAGGGCTGTTCAAGAAGGCTCAGGAGCTTAACACTCTCTGTGATGCTGAAATTGCTCTCATCGTTTTCTCCACAACCAACAAGCTCTTCCAATATGCTACTTCAAGTATGCAGCGGGTAATTGAAAAACATAATCATTACTCAGAAATTCATAGATCTGTTGAGAATAGTGATCAAGATTATGATATGCTGTGCAAGAAAGAGGAACAAAAGGCTCTTGAACTCAGACAATTGAATGGAGAAGATCTTCAAGGATTGACACTAAAAGAACTCCAGAAACTAGAAGAACAACTCCAAAGAGGGTTGACCACTGCTTTAAAAGTAAAGGATGAAAAAATTAAGTTAGAGATCAGCAACCTTAAGAGAAAGGGAGTGAAACTGATGGAAGAGAACAATAATCTGAAGCAGATGCCATCAAACCCTGTGAACCGGCAAATCCATTCCCCTGAGCCCATTGGTGCCTCCTGCAGTTCATCTTTTCAGGTGCCTCATCAAGAACATGCTATAGACACATACATCAAGTTGGGGCTGCCTTAA 612 0.4069 MTRKKIEIKKIDNISSRQVTFSKRRKGLFKKAQELNTLCDAEIALIVFSTTNKLFQYATSSMQRVIEKHNHYSEIHRSVENSDQDYDMLCKKEEQKALELRQLNGEDLQGLTLKELQKLEEQLQRGLTTALKVKDEKIKLEISNLKRKGVKLMEENNNLKQMPSNPVNRQIHSPEPIGASCSSSFQVPHQEHAIDTYIKLGLP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc11g00046 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc11g00046 203 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Stsc11g00046 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc11g00046 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc11g00046 203 Coils Coil 116 136 - -
Stsc11g00046 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc11g00046 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc11g00046 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc11g00046 203 Coils Coil 142 162 - -
Stsc11g00046 203 Gene3D - 14 100 IPR036879 GO:0003677|GO:0046983
Stsc11g00046 203 Pfam K-box region 77 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc11g00046 203 ProSiteProfiles K-box domain profile. 79 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc11g00046 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 157 - -
Stsc11g00046 203 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc11g00046 Stsc-Chr11 211929 215703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc11g00046 1 203 MADS-box Gene Family AT2G22540 40.664 2.90e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc11g00046 K-box 4.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc11g00046 - - aip:107631071 231.876