LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc11g00028	ATGGTAGCATCTCATCATCTATACTATTATTCGAAGAAAACCTTTCTTCTTGCCTCTTCTTTTCTCAAAACATTTTTCTTCACCTTCCTATTCGCGGCTGTAACATCACATTATTCACATGCAGCTGCATTAGCCTTCAACTACCAAACATTTAGCAACATTGGAAACACATTAAATCTAACAGGAGACGTCTCTCTGGACAACAATAATGGAGCACTCAACCTCACTGATTACGACAAAAATAGTCTTGGCAGAGTCACATATTACAAACTGCTGCATCTTTGGGACAACAAAACAGGCAAGGCCACAGAATTCACTACACACTTCACCTTCTCCATCAACACACCAAACAAAACTCATCATGGGGATGGAATCACCTTCTATCTTGCTCAACAAAACTTCCCACTTACAGCTCCAAGATTTGGAGGTAGCATCGGTCTCCTGTCCCCCAAACAGTACAAGAATTCAAGCTACATAACCGATGAGCATCCCTTTGTGGCAGTGGAGTTTGACACCAATTACAATCAAGAATGGGATCCATGTTCTGGACTGGAAGATCATGATCATGTAGGTATTGATATTAATGGCATGGCCACCTCTCTCACTAAGGAATGGTACACTACCAAGGATGAGAGAGTGTACGATGTTAATATCACTTACCATGCTACTTCAAACAATCTCACTGTGTTTTTCACTGGATACAAGGACAACATCACAAATAAACAGCAGTTATCTGCTGTTGTGGATCTGAGACAGAAACTACCAGAATGGGTTGAATTTGGCTTCACTTCATCAACGGGATGGTATTATGAGTATCATACTCTTTTCTCTTGGTCCTTTAACTCTACTTTGGACTTTGAAGCACACAAGGAAAGAAAAACAGCTATGACCAAAGGGTTGACCATTAGTGCAGGTGTTTTATTAACCAGTGTTTTGGGGATAGCTTGCCTTATGGGATGGAAGCTCGTGATGAGGAGAAATAACGTTGAACTTGCAATGGATAGAGATTTTGAAAGAAACACTGGGCCTAGGAGGTTTTCCTATCAAGAACTTTCTAGAGCAACTAGCAACTTTGCCAAGGGACAGAAAATTGGAGAGGGAGGTTTTGGTGGAGTCTACAGAGGATTCTTAAGAGACTTGGACATCCATGTTGCCATCAAGAAGATTTCTCAGGGATCTCGACAAGGTGTGAGGGAGTATGCATCTGAAGTTAAGATTATTAGTAAGTTGAGGCATAAGAATTTGGTTCAACTCATTGGTTGGTGTCACGAGCAGAATGATCTGCTTCTGGTTTATGAGTTCATGGAAAATGGAAGTTTGGATTCTTATATTTTCAAAGGTAAAGGCCTATTGCCATGGGAAGTAAGGTATAATGTTGTTAGAGGCTTGGCTTCAGCATTGTTATACTTGCATGAAGAGTGGGAGCAATGTGTGCTTCATAGGGACATAAAACCGAACAATATTATGCTGGATTCTAATTTTAATGCAAGGCTTGGAGATTTCGGGTTAGCTAGACTGATGGATCATGAGGCAAGTTCAAAAACAACGACATTAGCAGGAACTTTTGGTTATCTTGCCCCTGAAGCCGCTACGAGAGGCAAGACTAGTAAGGAGTCTGATGTATACAGTTTTGGAATTGTTGCATTGGAGATAGCGTGCGGAAGGAGAGTAATCGAGAGAAATCTGAGAGAAGATCAGTTTTTCTTGGTGGATTGGGTATGGGAACTGTACAGCACAGGTGATATACTCAAAGCAGCAGATCCAAGATTAGAGGGAGCATTTGATGAACAAGAAATGGAGAGGGTAATGATAGTTGGGCTTTGGTGTGCTCATATGGATTACCTTGAGAGACCATCAATAAGGCAAGCAATTCAGATGCTTTGTTTTGAAGTTCCAGTGCCCACACTTCCATCACAGCCAAACGCAACCTTCAACTTCAACCAACATGTCCTTCACACACTCCAGCAATACAGCTTCTAA	1980	0.4136	MVASHHLYYYSKKTFLLASSFLKTFFFTFLFAAVTSHYSHAAALAFNYQTFSNIGNTLNLTGDVSLDNNNGALNLTDYDKNSLGRVTYYKLLHLWDNKTGKATEFTTHFTFSINTPNKTHHGDGITFYLAQQNFPLTAPRFGGSIGLLSPKQYKNSSYITDEHPFVAVEFDTNYNQEWDPCSGLEDHDHVGIDINGMATSLTKEWYTTKDERVYDVNITYHATSNNLTVFFTGYKDNITNKQQLSAVVDLRQKLPEWVEFGFTSSTGWYYEYHTLFSWSFNSTLDFEAHKERKTAMTKGLTISAGVLLTSVLGIACLMGWKLVMRRNNVELAMDRDFERNTGPRRFSYQELSRATSNFAKGQKIGEGGFGGVYRGFLRDLDIHVAIKKISQGSRQGVREYASEVKIISKLRHKNLVQLIGWCHEQNDLLLVYEFMENGSLDSYIFKGKGLLPWEVRYNVVRGLASALLYLHEEWEQCVLHRDIKPNNIMLDSNFNARLGDFGLARLMDHEASSKTTTLAGTFGYLAPEAATRGKTSKESDVYSFGIVALEIACGRRVIERNLREDQFFLVDWVWELYSTGDILKAADPRLEGAFDEQEMERVMIVGLWCAHMDYLERPSIRQAIQMLCFEVPVPTLPSQPNATFNFNQHVLHTLQQYSF	659

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc11g00028	659	SUPERFAMILY	Protein kinase-like (PK-like)	341	640	IPR011009	-
	Stsc11g00028	659	Pfam	Legume lectin domain	44	290	IPR001220	GO:0030246
	Stsc11g00028	659	SMART	serkin_6	358	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc11g00028	659	Gene3D	Phosphorylase Kinase; domain 1	343	434	-	-
	Stsc11g00028	659	FunFam	L-type lectin-domain containing receptor kinase IX.1	343	434	-	-
	Stsc11g00028	659	Pfam	Protein kinase domain	359	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc11g00028	659	ProSitePatterns	Legume lectins alpha-chain signature.	254	263	IPR000985	-
	Stsc11g00028	659	ProSitePatterns	Legume lectins beta-chain signature.	166	172	IPR019825	-
	Stsc11g00028	659	ProSitePatterns	Protein kinases ATP-binding region signature.	364	388	IPR017441	GO:0005524
	Stsc11g00028	659	Gene3D	Transferase(Phosphotransferase) domain 1	435	645	-	-
	Stsc11g00028	659	FunFam	Lectin-domain containing receptor kinase A4.3	435	646	-	-
	Stsc11g00028	659	CDD	lectin_legume_LecRK_Arcelin_ConA	44	284	IPR001220	GO:0030246
	Stsc11g00028	659	Gene3D	-	41	306	-	-
	Stsc11g00028	659	ProSiteProfiles	Protein kinase domain profile.	358	636	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc11g00028	659	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	478	490	IPR008271	GO:0004672\|GO:0006468
	Stsc11g00028	659	SUPERFAMILY	Concanavalin A-like lectins/glucanases	42	285	IPR013320	-
	Stsc11g00028	659	CDD	STKc_IRAK	364	628	-	-
	Stsc11g00028	659	PANTHER	-	65	627	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc11g00028	Stsc-Chr11	144602	146649	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc11g00028	41	644	Receptor kinase-like Gene Family	AT5G10530	45.733	2.10e-178	520

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Stsc11g00028		Pkinase	1.9e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc11g00028	-		-	cam:101491058	776.548