LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc11g00027	ATGATATATTATCAACACCATCCAGAAGTAGAAGCAGAATCCTTATCATTCAACTACCCGGATTTCAGTAACCCGGGAAACACCTTGAACTTTTCGGGAGAGGTCTTTACAGAGAACAATGGAGTCCTCCAACTCACCAAGTTCCATACCAAAGATAGTCTTGGCAGAGTCGTCTACAGCAAGCTACTACATCTTGCAGACTTCACTACCAGTTTTTCCTTTTCCACCAACACGCCAAATAGATCCTTTTATGGTGATGGCATCACCTTCTTTCTTGCAAAGCCAGATTTCCCACTTCCTAATCCTAGAGATGGAAGTGGAATCGGCCTCATGAGTCGTGACCAAGCCGGGAACCCGACCTACACAAACCAAAATCCATTTGTGGCCGTGGAATTTGATACCTTTTCCAATAACTGGGATCCTCCTTATGCCCATGTTGGTGTGGATGTTGGTTCTTTGCACAGTATTTGCACTAGACAATGGTTCCAGGTTTGGGATCAAAGAGGATATGATGTTGTTATCACTTACAAGTCTAGCTCAAACAATTTGAGTGTCACCTTCACCGGATATAAAGACAACATCACAAAAATTGAACAACACTTGACCTGTGATAAAGTTAATCTGAGGGAAATCTTACCGGAATGGGTTGAATTTGGTTTCACTTCAGCAACAGGATATGCACCAGGGAAGGATTTTTCGTATGAGTATCATACCCTTAAATCATGGTCCTTCAACTCTAGTTTGGACTTGGAGGCACAACATCACAAGGGTAAAAGCAAGAAAGGTCTAGTTATAGGGGTGACCATTGGTGGTGCATGTATTCTGGGGATGCTAGCTTGTCTTTTCATATGGAAACTGATGAGGAGAAGTAGGGGCAGGGAGAATGCTCATGAGGTTGCTATGGACAGAGATTTTGAACGAGGAACTGGTCCTAGGAGGTTTTCCTATCAAGAACTTTCTAGAGCAACTAGCAACTTTGCAAATGGACACAAAATTGGAGAGGGAGGTTTTGGTGGAGTTTACAGAGGATTCTTAAGAGACTTGAACATCCATGTTGCCATCAAGAAGGTTTCTCAGGGATCTCAACAAGGTGTGAGGGAGTATGCTTCTGAAGTCAAGATCATTAGTCAACTGAGGCATAAAAACTTGGTTCAACTCATTGGATGGTGTCACGAGCAGAATGATCTGTTACTGGTGTACGAGTATGTCGAAAATGGAAGCTTGGATTCATATCTGTTCAAAGGTAAAGGCCTATTAACATGGGAAGTAAGATATAAAATTGCTAGAGGCTTGGCTTCAGCATTGTTATATTTGCATGAAGAGTGGCACCACTGTGTGCTTCATAGGGACATCAAACCCAGCAATGTTATGTTGGATTCTAATTTCAATGCAAAGCTCGGAGATTTTGGTTTAGCAAGACTAATGGACCACGGGACAAGTTCGAAAACAACAGATTTAGCAGGAACATTGGGGTATCTAGCTCCTGAAGCTGCAACCAGAGGGAAGGCTAGTAAGGAATCTGATGTATTCAGCTTTGGAGTAGCTGTTTTGGAGATAGCATGTGGAAGAAAAGTGATTCAACAAAATCAAATTGAAAATCAGATATACTTGGTTGATTGGGTTTGGGAACTGTATAGCACAGGTAATGTTCTAGAAGCAGGTGATCCAAGATTGTATGGTGTGTTTGATAAAGAAGAAATGGAGAGGTTAATGATTGTCGGCCTTTGGTGTACTCACTCTAATTACATTATGAGGCCCAAGATTAGTCAAGCTGCTCATGTGCTTAACCATGAAGCTGCATTGCCCACTCTGTCATCACAAGAGCATGGCTCTACCTTGCTCTCGAGGATTCCTGCTTTTTCTGGGAATAACCAAACACAGCCTTCTATTTCTTCAAGTAGCTCTGTCACTACTGGATCTTCACAATCGGGCAGTGCAACTTCACAACTCATTTCTCCACGGTCTAAGATATTGCATACACGCTAA	1986	0.423	MIYYQHHPEVEAESLSFNYPDFSNPGNTLNFSGEVFTENNGVLQLTKFHTKDSLGRVVYSKLLHLADFTTSFSFSTNTPNRSFYGDGITFFLAKPDFPLPNPRDGSGIGLMSRDQAGNPTYTNQNPFVAVEFDTFSNNWDPPYAHVGVDVGSLHSICTRQWFQVWDQRGYDVVITYKSSSNNLSVTFTGYKDNITKIEQHLTCDKVNLREILPEWVEFGFTSATGYAPGKDFSYEYHTLKSWSFNSSLDLEAQHHKGKSKKGLVIGVTIGGACILGMLACLFIWKLMRRSRGRENAHEVAMDRDFERGTGPRRFSYQELSRATSNFANGHKIGEGGFGGVYRGFLRDLNIHVAIKKVSQGSQQGVREYASEVKIISQLRHKNLVQLIGWCHEQNDLLLVYEYVENGSLDSYLFKGKGLLTWEVRYKIARGLASALLYLHEEWHHCVLHRDIKPSNVMLDSNFNAKLGDFGLARLMDHGTSSKTTDLAGTLGYLAPEAATRGKASKESDVFSFGVAVLEIACGRKVIQQNQIENQIYLVDWVWELYSTGNVLEAGDPRLYGVFDKEEMERLMIVGLWCTHSNYIMRPKISQAAHVLNHEAALPTLSSQEHGSTLLSRIPAFSGNNQTQPSISSSSSVTTGSSQSGSATSQLISPRSKILHTR	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc11g00027	661	Pfam	Protein kinase domain	328	533	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc11g00027	661	SUPERFAMILY	Concanavalin A-like lectins/glucanases	13	250	IPR013320	-
	Stsc11g00027	661	SUPERFAMILY	Protein kinase-like (PK-like)	310	599	IPR011009	-
	Stsc11g00027	661	MobiDBLite	consensus disorder prediction	622	661	-	-
	Stsc11g00027	661	ProSiteProfiles	Protein kinase domain profile.	326	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc11g00027	661	SMART	serkin_6	326	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc11g00027	661	CDD	lectin_legume_LecRK_Arcelin_ConA	15	248	IPR001220	GO:0030246
	Stsc11g00027	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	446	458	IPR008271	GO:0004672\|GO:0006468
	Stsc11g00027	661	FunFam	L-type lectin-domain containing receptor kinase IX.1	311	402	-	-
	Stsc11g00027	661	Pfam	Legume lectin domain	14	256	IPR001220	GO:0030246
	Stsc11g00027	661	ProSitePatterns	Legume lectins alpha-chain signature.	212	221	IPR000985	-
	Stsc11g00027	661	FunFam	Lectin-domain containing receptor kinase A4.3	403	615	-	-
	Stsc11g00027	661	ProSitePatterns	Legume lectins beta-chain signature.	128	134	IPR019825	-
	Stsc11g00027	661	Gene3D	-	12	270	-	-
	Stsc11g00027	661	PANTHER	-	37	602	-	-
	Stsc11g00027	661	ProSitePatterns	Protein kinases ATP-binding region signature.	332	356	IPR017441	GO:0005524
	Stsc11g00027	661	CDD	STKc_IRAK	332	596	-	-
	Stsc11g00027	661	Gene3D	Transferase(Phosphotransferase) domain 1	403	614	-	-
	Stsc11g00027	661	Gene3D	Phosphorylase Kinase; domain 1	311	402	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc11g00027	Stsc-Chr11	136856	138841	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc11g00027	14	607	Receptor kinase-like Gene Family	AT5G10530	44.788	2.97e-165	487

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Stsc11g00027		Pkinase	1.6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc11g00027	-		-	cam:101491058	777.704