Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc11g00023 ATGGTGGTTGGTATCTTCGTCGCTGAGACTAGAGAGTTCAACAAGCCTAGCACAGCACAGGTCACTCTTCTTCTTCAAAATTCAAATTACTTATACATAATGAGTGCTGAAGGAGCCAACGAGGATTGCCTTGCTTGGGCTGCTACAGATCAATCTGGAATCCTATCACCTTACAAATTCACTCGCAGGGCTCTTGGCAATGATGATGTTCGAATAAAAATTACCCACTGTGGGGTTTGCTATGCTGATGTTGTTTGGACTAGGAATAAACATGGTGATTCCAAATATCCTGTAGTACCTGGACATGAGATTGCTGGGGTTGTGGAGAAAGTTGGTTCTAATGTCCAACGTTTCAAAGTTGGTGACCATGCTGGTGTAGGGACTTATGTCAATTCATGCAGGGATTGTGAGTATTGTAATGACAGAGAAGAAGTTTATTGTGAGAAGGGAGCAGTTTATACCTTCAACGGAGTTGATGTTGATGGAACAATTACAAAAGGAGGATATTCAAGTTACATAGTAGTCCATGAAAGCTACTGTTATCTGATACCCAAAAATTACCCATTGGCTTCAGCTGCTCCACTGCTTTGTGCTGGAATCACTGTTTACAGTCCCATGATGCGCCACAAAATGAATCAACCCGGCAAGTCTCTAGCGGTGATTGGTCTTGGTGGTCTCGGTCATATGGCAGTGAAATTTGGAAAGGCATTTGGGTTGAATGTAACAGTTCTCAGCACCAGCATATCTAAGAAAGAAGAGGCCCTGAATCTACTTGGTGCAGATAAATTTGTCGTTTCAACTGATAAAGAGCAAATGGCGGCATTGGCTAAGTCTTTTGACTTTATAGTTGATGCAGCGTCTGGTGATCACCCGTTTGATCCTTACATTGCACTGTTGAAGGTATCTGGTGCTATGGTCTTGGTTGGCTTTCCAAGTGAAGTCAAATTCAGCCCTGCGAATATTATTCTTGGTAAGAGAACCATATCAGGGAGTGTTACTGGTGGGACAAAAGAGACACAAGAGATGATTGACTTCTGCGCAGCAAATGGAATTCACCCAAGCATAGAAGTGGTTCCAATAGAGTATGCAAATCAAGCTCTTGAGAGAATGATAAATAGGGATGTCAAATATCGGTTTGTTATAGATATTCAAAACTCCCTAAAATAG 1167 0.4199 MVVGIFVAETREFNKPSTAQVTLLLQNSNYLYIMSAEGANEDCLAWAATDQSGILSPYKFTRRALGNDDVRIKITHCGVCYADVVWTRNKHGDSKYPVVPGHEIAGVVEKVGSNVQRFKVGDHAGVGTYVNSCRDCEYCNDREEVYCEKGAVYTFNGVDVDGTITKGGYSSYIVVHESYCYLIPKNYPLASAAPLLCAGITVYSPMMRHKMNQPGKSLAVIGLGGLGHMAVKFGKAFGLNVTVLSTSISKKEEALNLLGADKFVVSTDKEQMAALAKSFDFIVDAASGDHPFDPYIALLKVSGAMVLVGFPSEVKFSPANIILGKRTISGSVTGGTKETQEMIDFCAANGIHPSIEVVPIEYANQALERMINRDVKYRFVIDIQNSLK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc11g00023 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 188 351 IPR036291 -
Stsc11g00023 388 Pfam Zinc-binding dehydrogenase 225 347 IPR013149 -
Stsc11g00023 388 FunFam Cinnamyl alcohol dehydrogenase 198 353 - -
Stsc11g00023 388 FunFam Putative cinnamyl alcohol dehydrogenase 6 354 383 - -
Stsc11g00023 388 Gene3D - 46 383 - -
Stsc11g00023 388 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 101 115 IPR002328 GO:0008270|GO:0016491
Stsc11g00023 388 Gene3D - 198 353 - -
Stsc11g00023 388 CDD CAD1 45 382 IPR047109 GO:0016616
Stsc11g00023 388 Pfam Alcohol dehydrogenase GroES-like domain 68 181 IPR013154 -
Stsc11g00023 388 PANTHER ALDEHYDE REDUCTASE 42 386 IPR047109 GO:0016616
Stsc11g00023 388 SUPERFAMILY GroES-like 47 216 IPR011032 -
Stsc11g00023 388 SMART PKS_ER_names_mod 53 381 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc11g00023 Stsc-Chr11 124992 127123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc11g00023 35 388 Monolignol Biosynthesis Gene Families AT1G72680 72.881 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc11g00023 K00083 - vvi:100244482 617.076